ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1950

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1950_1
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..866)
DNA (864bp) protein (288aa)
Nitronate monooxygenase n=3 Tax=Burkholderia cenocepacia RepID=T0FZD3_9BURK
putative 2-nitropropane dioxygenase
Nitronate monooxygenase {ECO:0000313|EMBL:ERI28330.1}; TaxID=985077 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia BC7.;"
SCN18_25_8_15_R2_B_scaffold_1950_2
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(863..1228)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VNE2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL46334.1}; TaxID=83406 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HdN1.;"
SCN18_25_8_15_R2_B_scaffold_1950_3
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1429..2325)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E266EC
putative protease
Putative protease {ECO:0000313|EMBL:AHK46776.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCN18_25_8_15_R2_B_scaffold_1950_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2322..3290)
DNA (969bp) protein (323aa)
Peptidase U32 n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UML6_SINMW
protease YhbU precursor
Protease YhbU {ECO:0000313|EMBL:AHK46775.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCN18_25_8_15_R2_B_scaffold_1950_5
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3290..3784)
DNA (495bp) protein (165aa)
Putative lipid carrier protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BME7_9RHIZ
Putative lipid carrier protein {ECO:0000313|EMBL:EJL53674.1}; Flags: Precursor;; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
SCP2 sterol-binding domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1950_6
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3910..5391
DNA (1482bp) protein (494aa)
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Sinorhizobium medicae RepID=UPI00037F305B
UbiD family decarboxylase
UbiD family decarboxylase {ECO:0000313|EMBL:ABR64894.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCN18_25_8_15_R2_B_scaffold_1950_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5388..5981
DNA (594bp) protein (198aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3C3_9BRAD
ubiX; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
SCN18_25_8_15_R2_B_scaffold_1950_8
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6125..6376)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AER5_9PROT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAN34296.1}; TaxID=1163617 species="Bacteria; Proteobacteria; Betaproteobacteria; Sulfuricellales; Sulfuricellaceae; Sulfuricella.;" source="Sulfuricella denitrificans skB26.;"
SCN18_25_8_15_R2_B_scaffold_1950_9
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6376..6711)
DNA (336bp) protein (112aa)
Putative aromatic ring hydroxylating protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCW5_9RHOB
Putative aromatic ring hydroxylating protein {ECO:0000313|EMBL:EJW10704.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
protein of unassigned function
SCN18_25_8_15_R2_B_scaffold_1950_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6974..7684
DNA (711bp) protein (237aa)
Putative transcriptional regulator Crp/Fnr family protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8X1_9BACT
Putative transcriptional regulator Crp/Fnr family protein {ECO:0000313|EMBL:ACF98127.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
Crp family transcriptional regulator protein
SCN18_25_8_15_R2_B_scaffold_1950_11
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7623..7889)
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8X2_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98128.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1950_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8012..9223
DNA (1212bp) protein (404aa)
Putative NnrS family protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8X3_9BACT
Putative NnrS family protein {ECO:0000313|EMBL:ACF98129.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
nnrS family protein
SCN18_25_8_15_R2_B_scaffold_1950_13
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9326..9763)
DNA (438bp) protein (146aa)
UPI0003D03E63 related cluster n=1 Tax=unknown RepID=UPI0003D03E63
Uncharacterized protein {ECO:0000313|EMBL:KKB76853.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
rnk1; transcription elongation factor GreA/GreB
SCN18_25_8_15_R2_B_scaffold_1950_14
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9783..9992)
DNA (210bp) protein (70aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003631B99
Uncharacterized protein {ECO:0000313|EMBL:KKC38245.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1950_15
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10094..10582)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003705031
GreA/GreB family elongation factor {ECO:0000313|EMBL:EYD76668.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
GreA/GreB family elongation factor
SCN18_25_8_15_R2_B_scaffold_1950_16
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11178..11630
DNA (453bp) protein (151aa)
Nucleoside diphosphate kinase regulator n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JKB9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB10771.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
nucleoside diphosphate kinase regulator
SCN18_25_8_15_R2_B_scaffold_1950_trna_2
unknown

Not on your lists

comp(11827..11897)
DNA (71bp)
transferRNA Gly
SCN18_25_8_15_R2_B_scaffold_1950_trna_1
unknown

Not on your lists

comp(12010..12097)
DNA (88bp)
transferRNA Tyr
SCN18_25_8_15_R2_B_scaffold_1950_17
Pinctada fucata, Pinctada, Pterioida, Pteriomorphia, Mollusca, Metazoa

Not on your lists

comp(12342..12716)
DNA (375bp) protein (125aa)
Shell matrix protein n=1 Tax=Pinctada fucata RepID=Q76K52_PINFU
Shell matrix protein {ECO:0000313|EMBL:BAD00044.1}; TaxID=50426 species="Eukaryota; Metazoa; Lophotrochozoa; Mollusca; Bivalvia; Pteriomorphia; Pterioida; Pterioidea; Pteriidae; Pinctada.;" source="Pinctada fucata (Pearl oyster).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1950_18
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12840..13223
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRS4_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB74008.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCN18_25_8_15_R2_B_scaffold_1950_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13227..13892
DNA (666bp) protein (222aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2DZT0_9GAMM
two component response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EGV31969.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
SCN18_25_8_15_R2_B_scaffold_1950_20
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13889..15247
DNA (1359bp) protein (453aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Two component sensor kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LV37_RHITR
two component sensor kinase
SCN18_25_8_15_R2_B_scaffold_1950_21
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15285..16043
DNA (759bp) protein (253aa)
rRNA methylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RCU8_PELHB
RNA methyltransferase {ECO:0000313|EMBL:KFL31398.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rRNA methylase
SCN18_25_8_15_R2_B_scaffold_1950_22
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16104..16427)
DNA (324bp) protein (108aa)
Displaying 24 items

View Taxonomy