ggKbase home page

SCN18_25_8_15_R2_B_scaffold_2213

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2213_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..80
DNA (78bp) protein (26aa)
SCN18_25_8_15_R2_B_scaffold_2213_2
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

127..996
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036627D4
Uncharacterized protein {ECO:0000313|EMBL:KFC61776.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2213_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1076..1579
DNA (504bp) protein (168aa)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI9_PELHB
Periplasmic thiol:disulfide oxidoreductase DsbB, r equired for DsbA reoxidation {ECO:0000313|EMBL:CDP51786.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation
SCN18_25_8_15_R2_B_scaffold_2213_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1871..2134)
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP97_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57483.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
addiction module antitoxin
SCN18_25_8_15_R2_B_scaffold_2213_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2199..2756)
DNA (558bp) protein (186aa)
HNH endonuclease family protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI8_PELHB
MFS transporter {ECO:0000313|EMBL:KFL28391.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
HNH endonuclease family protein
SCN18_25_8_15_R2_B_scaffold_2213_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2855..3499)
DNA (645bp) protein (215aa)
Esterase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI7_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB86119.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
phospholipase/carboxylesterase family protein
SCN18_25_8_15_R2_B_scaffold_2213_7
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3499..4143)
DNA (645bp) protein (215aa)
HhH-GPD base excision DNA repair family protein, probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI6_PELHB
DNA-3-methyladenine glycosidase {ECO:0000313|EMBL:KKB11117.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
HhH-GPD base excision DNA repair family protein
SCN18_25_8_15_R2_B_scaffold_2213_8
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4176..5021
DNA (846bp) protein (282aa)
Glutamyl-Q-tRNA synthetase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI5_PELHB
Glutamyl-Q-tRNA synthetase {ECO:0000313|EMBL:KFC65399.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
glutamyl-Q-tRNA synthetase
SCN18_25_8_15_R2_B_scaffold_2213_9
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5067..6017)
DNA (951bp) protein (317aa)
UPI0003CFE071 related cluster n=1 Tax=unknown RepID=UPI0003CFE071
Protein {ECO:0000313|EMBL:CDP51792.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2213_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6123..7019
DNA (897bp) protein (299aa)
Uncharacterized protein {ECO:0000313|EMBL:KFL28396.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
LysR family transcriptional regulator id=12550541 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
transcriptional regulator, LysR family
SCN18_25_8_15_R2_B_scaffold_2213_11
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7016..7207
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0THU4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE06032.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2213_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7262..7855
DNA (594bp) protein (198aa)
Cob(I)alamin adenosyltransferase PduO {ECO:0000313|EMBL:CDP51795.1}; EC=2.5.1.17 {ECO:0000313|EMBL:CDP51795.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Cob(I)alamin adenosyltransferase PduO n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFI3_PELHB
Cob(I)alamin adenosyltransferase PduO
SCN18_25_8_15_R2_B_scaffold_2213_13
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7923..8105
DNA (183bp) protein (61aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB07678.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCN18_25_8_15_R2_B_scaffold_2213_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8229..8849
DNA (621bp) protein (207aa)
maltose O-acetyltransferase n=1 Tax=Patulibacter americanus RepID=UPI0003B64B7F
Acetyltransferase {ECO:0000313|EMBL:KFC70604.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
maltose O-acetyltransferase
SCN18_25_8_15_R2_B_scaffold_2213_15
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8987..9880)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000364F2CC
Sugar kinase, ribokinase {ECO:0000313|EMBL:EJN02256.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ribokinase-like domain-containing protein
SCN18_25_8_15_R2_B_scaffold_2213_16
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9883..10500)
DNA (618bp) protein (206aa)
Thiol:disulfide oxidoreductase TlpA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFH8_PELHB
Sodium:dicarboxylate symporter {ECO:0000313|EMBL:KKB78333.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
thiol:disulfide oxidoreductase TlpA
SCN18_25_8_15_R2_B_scaffold_2213_17
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10564..12006
DNA (1443bp) protein (481aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
Argininosuccinate lyase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFH7_PELHB
argininosuccinate lyase
SCN18_25_8_15_R2_B_scaffold_2213_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12143..12844
DNA (702bp) protein (234aa)
UPI0003CF6BC1 related cluster n=1 Tax=unknown RepID=UPI0003CF6BC1
Uncharacterized protein {ECO:0000313|EMBL:KJS09909.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
cation transport protein, ChaC related
SCN18_25_8_15_R2_B_scaffold_2213_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12953..14209
DNA (1257bp) protein (419aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
Diaminopimelate decarboxylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFH6_PELHB
diaminopimelate decarboxylase
Displaying 19 items

View Taxonomy