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SCN18_25_8_15_R2_B_scaffold_1242

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1242_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..2350)
DNA (2349bp) protein (783aa)
Sensory box histidine kinase/response regulator n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE93_PELHB
Histidine kinase {ECO:0000313|EMBL:KFL28455.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sensory box histidine kinase/response regulator
SCN18_25_8_15_R2_B_scaffold_1242_2
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2530..3075
DNA (546bp) protein (182aa)
ATPase n=1 Tax=Rhizobium leguminosarum RepID=UPI000375A9B7
ATPase {ECO:0000313|EMBL:KFL28454.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative ATPase
SCN18_25_8_15_R2_B_scaffold_1242_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3136..3867
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K641_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL28453.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Abortive infection protein
SCN18_25_8_15_R2_B_scaffold_1242_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3864..4538)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Ensifer adhaerens RepID=I0FX81_ENSAD
Uncharacterized protein {ECO:0000313|EMBL:KFL28452.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4547..5632)
DNA (1086bp) protein (362aa)
Flagellar biosynthesis protein FlhB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE94_PELHB
Flagellar biosynthesis protein FlhB {ECO:0000313|EMBL:KFL28451.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar biosynthesis protein FlhB
SCN18_25_8_15_R2_B_scaffold_1242_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5636..6406)
DNA (771bp) protein (257aa)
Flagellar biosynthetic protein fliR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE95_PELHB
Flagellar biosynthetic protein fliR {ECO:0000256|RuleBase:RU003842}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar biosynthesis protein FliR
SCN18_25_8_15_R2_B_scaffold_1242_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6406..6672)
DNA (267bp) protein (89aa)
Flagellar biosynthesis protein FliQ n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE96_PELHB
Flagellar biosynthesis protein FliQ {ECO:0000313|EMBL:KFL28449.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar biosynthesis protein FliQ
SCN18_25_8_15_R2_B_scaffold_1242_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6803..7297)
DNA (495bp) protein (165aa)
Flagellar hook-basal body complex protein FliE n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE97_PELHB
Flagellar hook-basal body complex protein FliE {ECO:0000256|HAMAP-Rule:MF_00724, ECO:0000256|SAAS:SAAS00116622}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
flagellar hook-basal body complex protein FliE
SCN18_25_8_15_R2_B_scaffold_1242_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7318..7728)
DNA (411bp) protein (137aa)
Flagellar basal-body rod protein FlgC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE98_PELHB
Flagellar basal-body rod protein FlgC {ECO:0000256|RuleBase:RU362062}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar basal body rod protein FlgC
SCN18_25_8_15_R2_B_scaffold_1242_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7742..8149)
DNA (408bp) protein (136aa)
Flagellar basal-body rod protein FlgB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE99_PELHB
Flagellar basal body rod protein FlgB {ECO:0000256|PIRNR:PIRNR002889}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
flagellar basal-body rod protein FlgB
SCN18_25_8_15_R2_B_scaffold_1242_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8407..9060
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA0_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28445.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9023..9817
DNA (795bp) protein (265aa)
Flagellar biosynthesis protein FliP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA1_PELHB
Flagellar biosynthesis protein flip {ECO:0000313|EMBL:KFL28444.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar biosynthesis protein FliP
SCN18_25_8_15_R2_B_scaffold_1242_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9866..13255)
DNA (3390bp) protein (1130aa)
Tetratricopeptide repeat domain protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28440.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13428..14441)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC69144.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14438..14902)
DNA (465bp) protein (155aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFC69143.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14902..16068)
DNA (1167bp) protein (389aa)
Flagellar motor switch protein FliM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA7_PELHB
Flagellar motor switch protein FliM {ECO:0000256|PIRNR:PIRNR002888}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar motor switch protein FliM
SCN18_25_8_15_R2_B_scaffold_1242_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16068..16583)
DNA (516bp) protein (172aa)
Flagellar biosynthesis protein FliL n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80431.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
flagellar biosynthesis protein FliL
SCN18_25_8_15_R2_B_scaffold_1242_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16871..17611
DNA (741bp) protein (247aa)
Flagellar basal-body rod protein FlgF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REA9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28437.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar basal body rod protein FlgF
SCN18_25_8_15_R2_B_scaffold_1242_19
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17627..18412
DNA (786bp) protein (262aa)
Flagellar basal-body rod protein FlgG n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REB0_PELHB
Flagellar basal body rod protein FlgG {ECO:0000313|EMBL:KFL28436.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar basal-body rod protein FlgG
SCN18_25_8_15_R2_B_scaffold_1242_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18425..19375
DNA (951bp) protein (317aa)
Flagellar basal-body P-ring formation protein FlgA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REB1_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL28435.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar basal body P-ring biosynthesis protein FlgA
SCN18_25_8_15_R2_B_scaffold_1242_21
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19391..20128
DNA (738bp) protein (246aa)
Flagellar L-ring protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4REB2_PELHB
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
flagellar L-ring protein FlgH
SCN18_25_8_15_R2_B_scaffold_1242_22
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20513..22012
DNA (1500bp) protein (500aa)
Carboxypeptidase Taq n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EKC1_9RHIZ
Peptidase M32 {ECO:0000313|EMBL:KFL28432.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
thermostable carboxypeptidase 1
SCN18_25_8_15_R2_B_scaffold_1242_23
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22256..22525
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PXU2_9RHIZ
Curlin {ECO:0000313|EMBL:KFL28431.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
conserved exported protein of unknown function
SCN18_25_8_15_R2_B_scaffold_1242_24
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22522..22899
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Asticcacaulis biprosthecum C19 RepID=F4QJ12_9CAUL
Putative uncharacterized protein {ECO:0000313|EMBL:EGF93075.1}; TaxID=715226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis biprosthecum C19.;"
SCN18_25_8_15_R2_B_scaffold_1242_25
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22884..23600
DNA (717bp) protein (239aa)
SCN18_25_8_15_R2_B_scaffold_1242_26
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23593..23880
DNA (288bp) protein (96aa)
UPI0003CDDD30 related cluster n=1 Tax=unknown RepID=UPI0003CDDD30
Uncharacterized protein {ECO:0000313|EMBL:ESY89038.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCN18_25_8_15_R2_B_scaffold_1242_27
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23873..24283
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Acinetobacter tandoii DSM 14970 = CIP 107469 RepID=R9BAE9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKH47593.1}; TaxID=186617 species="Viruses; environmental samples.;" source="uncultured marine virus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_28
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24280..24642
DNA (363bp) protein (121aa)
SCN18_25_8_15_R2_B_scaffold_1242_29
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24951..25565
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XNS0_DELAC
von Willebrand factor type A {ECO:0000313|EMBL:KGH27749.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1242_30
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25616..25825
DNA (210bp) protein (70aa)
Displaying items 1-30 of 31 in total

View Taxonomy