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SCN18_25_8_15_R2_B_scaffold_1497

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1497_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..560
DNA (558bp) protein (186aa)
UPF0324 membrane protein n=1 Tax=Xanthomonas translucens pv. translucens DSM 18974 RepID=L0T0S7_XANCT
Membrane protein {ECO:0000313|EMBL:KFL30958.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
membrane protein
SCN18_25_8_15_R2_B_scaffold_1497_2
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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633..1880
DNA (1248bp) protein (416aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11BP8_MESSB
SCN18_25_8_15_R2_B_scaffold_1497_3
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(1893..2195)
DNA (303bp) protein (101aa)
GDP-D-mannose 4,6-dehydratase n=1 Tax=Synechococcus phage S-SKS1 RepID=M4QRT5_9CAUD
GDP-D-mannose 4,6-dehydratase {ECO:0000313|EMBL:AGH31568.1}; TaxID=754042 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Siphoviridae.;" source="Synechococcus phage S-SKS1.;"
GDP-mannose 4,6-dehydratase
SCN18_25_8_15_R2_B_scaffold_1497_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2232..3575)
DNA (1344bp) protein (448aa)
UDP-glucose 6-dehydrogenase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LLC2_RHITR
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:KFL32887.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
rkpK; UDP-glucose 6-dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1497_5
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3888..4406
DNA (519bp) protein (173aa)
Prokaryotic transcription elongation factor GreA/GreB n=14 Tax=Brucella abortus RepID=B2SB43_BRUA1
Uncharacterized protein {ECO:0000313|EMBL:KKB76853.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
nucleoside diphosphate kinase regulator
SCN18_25_8_15_R2_B_scaffold_1497_6
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4410..6614)
DNA (2205bp) protein (735aa)
UPI0003CF418B related cluster n=1 Tax=unknown RepID=UPI0003CF418B
Uncharacterized protein {ECO:0000313|EMBL:KKC33280.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
periplasmic sensor diguanylate cyclase/phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_1497_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6749..7180)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NDJ4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:KKC31329.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1497_8
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7429..8586
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003696387
Uncharacterized protein {ECO:0000313|EMBL:KFL32886.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1497_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8672..9061
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00035DF962
Uncharacterized protein {ECO:0000313|EMBL:KKB75963.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCN18_25_8_15_R2_B_scaffold_1497_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9125..9676
DNA (552bp) protein (184aa)
signal peptide protein n=1 Tax=Oceanicola sp. S124 RepID=UPI000255A453
Uncharacterized protein {ECO:0000313|EMBL:KKB75962.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
copper metallochaperone
SCN18_25_8_15_R2_B_scaffold_1497_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9615..10262
DNA (648bp) protein (216aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RD91_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32885.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cytochrome oxidase biogenesis protein Sco1/SenC/PrrC copper metallochaperone
SCN18_25_8_15_R2_B_scaffold_1497_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..12449)
DNA (2121bp) protein (707aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFY4_PELHB
FOG: TPR repeat {ECO:0000313|EMBL:CDP53358.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1497_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12446..13495)
DNA (1050bp) protein (350aa)
Endoglucanase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFY5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32883.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
endoglucanase
SCN18_25_8_15_R2_B_scaffold_1497_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13492..15735)
DNA (2244bp) protein (748aa)
Cellulose synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFY6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32882.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cellulose synthase
SCN18_25_8_15_R2_B_scaffold_1497_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15732..17903)
DNA (2172bp) protein (724aa)
Cellulose synthase catalytic subunit (UDP-forming) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFY7_PELHB
Cellulose synthase {ECO:0000313|EMBL:KFL32881.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cellulose synthase catalytic subunit
SCN18_25_8_15_R2_B_scaffold_1497_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17922..18851)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFY8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:CDP53354.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1497_17
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19166..19831)
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JGZ3_OLICO
Uncharacterized protein {ECO:0000313|EMBL:KFL32880.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1497_18
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19985..20896)
DNA (912bp) protein (304aa)
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Carboxyphosphonoenolpyruvate phosphonomutase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JFJ3_9PROT
prpB; carboxyphosphonoenolpyruvate phosphonomutase
SCN18_25_8_15_R2_B_scaffold_1497_19
CN-SCN_Lautropia_89x, CN-SCN_Lautropia_89x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20912..21238)
DNA (327bp) protein (109aa)
methylcitrate synthase (EC:2.3.3.5)
methylcitrate synthase n=1 Tax=Acidovorax radicis RepID=UPI0002375824
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Displaying 19 items

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