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SCN18_25_8_15_R2_B_scaffold_1652

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1652_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..876
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJ49_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKB08873.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
ABC transporter ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_1652_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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880..2523
DNA (1644bp) protein (548aa)
Putative ABC-type Fe3+ transport system, permease component n=1 Tax=Vibrio nigripulchritudo RepID=U4KIX8_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:KKB08872.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
putative ABC-type Fe3+ transport system, permease component
SCN18_25_8_15_R2_B_scaffold_1652_3
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2582..3292)
DNA (711bp) protein (237aa)
branched-chain amino acid ABC transporter n=1 Tax=Rhizobium giardinii RepID=UPI000373DA42
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KKB77090.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter
SCN18_25_8_15_R2_B_scaffold_1652_4
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3273..4061)
DNA (789bp) protein (263aa)
ABC transporter, nucleotide binding/ATPase protein (Branched chain amino acid) n=2 Tax=Ketogulonicigenium vulgare RepID=F9YBX3_KETVW
Hemolysin III {ECO:0000313|EMBL:KKB77089.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative branched-chain amino acid uptake ABC transporter ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_1652_5
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4031..5032)
DNA (1002bp) protein (334aa)
Branched-chain amino acid ABC transporter, permease protein n=2 Tax=Ketogulonicigenium vulgare RepID=F9YBX2_KETVW
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KKB77088.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
Branched-chain amino acid ABC transporter, permease protein
SCN18_25_8_15_R2_B_scaffold_1652_6
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5029..5892)
DNA (864bp) protein (288aa)
ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000301AB8C
ABC transporter permease {ECO:0000313|EMBL:KKB77087.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
High-affinity branched-chain amino acid transport system permease protein livh
SCN18_25_8_15_R2_B_scaffold_1652_7
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6042..7208)
DNA (1167bp) protein (389aa)
Amino acid ABC transporter, periplasmic amino-acid binding protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5H4_KETVY
Amino acid-binding protein {ECO:0000313|EMBL:KKB77086.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
amino acid ABC transporter, periplasmic amino-acid binding protein
SCN18_25_8_15_R2_B_scaffold_1652_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7371..8207)
DNA (837bp) protein (279aa)
Transcriptional regulator, AraC family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11F69_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KFL32032.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
AraC family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1652_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8279..9439
DNA (1161bp) protein (387aa)
4-hydroxybenzoate 3-monooxygenase {ECO:0000313|EMBL:KFL32031.1}; EC=1.14.13.2 {ECO:0000313|EMBL:KFL32031.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
p-hydroxybenzoate hydroxylase transcriptional activator (EC:1.14.13.2)
4-hydroxybenzoate 3-monooxygenase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5I0_KETVY
SCN18_25_8_15_R2_B_scaffold_1652_10
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9441..10364)
DNA (924bp) protein (308aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI000373FB96
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AHF86938.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCN18_25_8_15_R2_B_scaffold_1652_11
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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10472..11311
DNA (840bp) protein (280aa)
hydrolase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003822ACB
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:EGE61234.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli CNPAF512.;"
SCN18_25_8_15_R2_B_scaffold_1652_12
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11344..11760
DNA (417bp) protein (139aa)
Transcriptional regulator, MarR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE87_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29161.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator, MarR family
SCN18_25_8_15_R2_B_scaffold_1652_13
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11833..13122
DNA (1290bp) protein (430aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RE86_PELHB
3-oxoacyl-ACP synthase
SCN18_25_8_15_R2_B_scaffold_1652_14
Mucilaginibacter paludis_SCNPILOT_CONT_1000_P_Mucilaginibacter_44_25, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(13162..14142)
DNA (981bp) protein (327aa)
Aldo/keto reductase n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y9B5_MESOW
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:AEH87562.1}; Flags: Precursor;; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
SCN18_25_8_15_R2_B_scaffold_1652_15
unknown

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comp(14404..14880)
DNA (477bp) protein (159aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1652_16
CN-SCN_Mesorhizobium_20x, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14894..15193
DNA (300bp) protein (100aa)
Transcriptional regulator n=1 Tax=Microvirga sp. WSM3557 RepID=I4YRX7_9RHIZ
LysR family transcriptional regulator {ECO:0000313|EMBL:KKB12526.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
Putative transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_1652_17
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15453..16304
DNA (852bp) protein (284aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ70_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC31810.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
Transcriptional regulator, AraC family
SCN18_25_8_15_R2_B_scaffold_1652_18
SCNPILOT_CONT_500_BF_Rhizobiales_63_22, SCNPILOT_CONT_500_BF_Rhizobiales_63_22, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16435..18546
DNA (2112bp) protein (704aa)
FhuA n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5F8N3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC31811.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
ferrichrysobactin receptor precursor
SCN18_25_8_15_R2_B_scaffold_1652_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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19252..19371
DNA (120bp) protein (40aa)
Twin-arginine translocation pathway signal n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IJQ0_AZOC5
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:KFL29159.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
twin-arginine translocation pathway signal
SCN18_25_8_15_R2_B_scaffold_1652_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19637..20980)
DNA (1344bp) protein (448aa)
ABC transporter, membrane spanning protein (Phosphonate) n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J544_9RHIZ
Phosphonate ABC transporter permease {ECO:0000313|EMBL:KFL31358.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phnE; ABC transporter, membrane spanning protein (phosphonate)
SCN18_25_8_15_R2_B_scaffold_1652_21
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20981..21952)
DNA (972bp) protein (324aa)
phosphonate ABC transporter permease n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E6BB0
Phosphonate ABC transporter permease {ECO:0000313|EMBL:KKB78240.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
phnE; ABC transporter, membrane spanning protein (phosphonate)
Displaying 21 items

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