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SCN18_25_8_15_R2_B_scaffold_1820

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1820_1
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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comp(1..483)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KRA3_METEX
Uncharacterized protein {ECO:0000313|EMBL:KKN49999.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(486..758)
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KKC32641.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCN18_25_8_15_R2_B_scaffold_1820_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1104..1802)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A7N5_STAND
Membrane protein {ECO:0000313|EMBL:KKB75862.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1799..3106)
DNA (1308bp) protein (436aa)
Signal transduction histidine kinase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0HA29_RHILT
Uncharacterized protein {ECO:0000313|EMBL:KKB75863.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Putative two-component sensor histidine kinase protein
SCN18_25_8_15_R2_B_scaffold_1820_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3103..3777)
DNA (675bp) protein (225aa)
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0C7V2_RHILT
Transcriptional regulator {ECO:0000313|EMBL:KKB75864.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
two-component response regulator protein
SCN18_25_8_15_R2_B_scaffold_1820_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3758..4342)
DNA (585bp) protein (195aa)
Cytochrome B561 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A806_STAND
Cytochrome B561 {ECO:0000313|EMBL:KKB75865.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
cytochrome B561
SCN18_25_8_15_R2_B_scaffold_1820_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4335..4607)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI000373E87B
Signal peptide protein {ECO:0000313|EMBL:KKB75866.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_8
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4777..6363)
DNA (1587bp) protein (529aa)
Phage integrase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5JD45_9RHIZ
Phage integrase {ECO:0000313|EMBL:EGL64205.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
integrase family protein
SCN18_25_8_15_R2_B_scaffold_1820_trna_1
unknown

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comp(6445..6531)
DNA (87bp)
transferRNA Ser
SCN18_25_8_15_R2_B_scaffold_1820_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6754..7077
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6J7X4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL32157.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7130..7786
DNA (657bp) protein (219aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RDW2_PELHB
peptide methionine sulfoxide reductase
SCN18_25_8_15_R2_B_scaffold_1820_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7908..8300
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F6Y6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB77830.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8327..8701
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC460 RepID=V4RFK8_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KFL32154.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
yraH; putative lyase YraH
SCN18_25_8_15_R2_B_scaffold_1820_13
unknown

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comp(9032..9580)
DNA (549bp) protein (183aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1820_14
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9882..10784)
DNA (903bp) protein (301aa)
PDZ/DHR/GLGF domain-containing protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J4TEP3_9RHIZ
Signal protein PDZ {ECO:0000313|EMBL:KFL32255.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
PDZ/DHR/GLGF domain-containing protein
SCN18_25_8_15_R2_B_scaffold_1820_15
Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10962..11369
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9VZ23_METEP
Uncharacterized protein {ECO:0000313|EMBL:KFL32256.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_16
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

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comp(11469..12068)
DNA (600bp) protein (200aa)
Dihydrofolate reductase n=1 Tax=Arthrobacter phenanthrenivorans (strain DSM 18606 / JCM 16027 / LMG 23796 / Sphe3) RepID=F0MB25_ARTPP
5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:KFL32257.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1820_17
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12288..13055)
DNA (768bp) protein (256aa)
TetR family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTN8_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KFL32258.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
transcriptional regulator RutR of pyrimidine catabolism (TetR family)
SCN18_25_8_15_R2_B_scaffold_1820_18
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13185..14510
DNA (1326bp) protein (442aa)
Omega amino acid--pyruvate aminotransferase {ECO:0000313|EMBL:KFL32259.1}; EC=2.6.1.18 {ECO:0000313|EMBL:KFL32259.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Omega-amino acid--pyruvate aminotransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H2_PELHB
omega-amino acid--pyruvate aminotransferase
SCN18_25_8_15_R2_B_scaffold_1820_19
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14577..16073
DNA (1497bp) protein (499aa)
Methylmalonate-semialdehyde dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7H1_PELHB
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KFL32260.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
methylmalonate-semialdehyde dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1820_20
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16220..17470
DNA (1251bp) protein (417aa)
Putative N-carbamyl-L-cysteine amidohydrolase, putative atcC n=1 Tax=Rhizobium sp. RepID=L0NGM8_RHISP
Allantoate amidohydrolase {ECO:0000313|EMBL:KFL32261.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Amidase, hydantoinase/carbamoylase family
Displaying 21 items

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