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SCN18_25_8_15_R2_B_scaffold_1844

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1844_1
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1207)
DNA (1206bp) protein (402aa)
Citrate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8V4_PELHB
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Citrate synthase (si)
SCN18_25_8_15_R2_B_scaffold_1844_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1362..2774)
DNA (1413bp) protein (471aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Glutamate--tRNA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8V5_PELHB
glutamyl-tRNA synthetase
SCN18_25_8_15_R2_B_scaffold_1844_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2852..4984
DNA (2133bp) protein (711aa)
DNA internalization-related competence protein ComEC/Rec2 n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8V6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32510.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
DNA internalization-related competence protein ComEC/Rec2
SCN18_25_8_15_R2_B_scaffold_1844_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4953..6914)
DNA (1962bp) protein (654aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
lacZ; beta-galactosidase (EC:3.2.1.23)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003826F77
SCN18_25_8_15_R2_B_scaffold_1844_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6924..7799)
DNA (876bp) protein (292aa)
Senescence marker protein-30 n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R9R6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL32508.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SMP-30/gluconolaconase/LRE-like region-containing protein
SCN18_25_8_15_R2_B_scaffold_1844_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7796..8407)
DNA (612bp) protein (204aa)
2-dehydro-3-deoxy-6-phosphogalactonate aldolase {ECO:0000313|EMBL:KFL32507.1}; EC=4.1.2.21 {ECO:0000313|EMBL:KFL32507.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
2-dehydro-3-deoxy-6-phosphogalactonate aldolase (EC:4.1.2.21)
2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CBM9_9RHOB
SCN18_25_8_15_R2_B_scaffold_1844_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8419..9330)
DNA (912bp) protein (304aa)
2-dehydro-3-deoxygalactonokinase n=1 Tax=Celeribacter baekdonensis B30 RepID=K2JGG2_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KFL32506.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
2-keto-3-deoxy-galactonokinase
SCN18_25_8_15_R2_B_scaffold_1844_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9617..11425
DNA (1809bp) protein (603aa)
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KFL32505.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KFL32505.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Dihydroxy-acid dehydratase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAR5_PELHB
dihydroxy-acid dehydratase
SCN18_25_8_15_R2_B_scaffold_1844_9
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11538..11975)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UGB6_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:KIV63125.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1844_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12074..12454)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J9M3_AGRRK
Cag pathogenicity island protein Cag4 {ECO:0000313|EMBL:KFL32501.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1844_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12454..13167)
DNA (714bp) protein (238aa)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|SAAS:SAAS00008101}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015};; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
LexA repressor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R8V7_PELHB
SOS-response repressor and protease LexA
SCN18_25_8_15_R2_B_scaffold_1844_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13263..13679)
DNA (417bp) protein (139aa)
Bis(5'-nucleosyl)-tetraphosphatase (Asymmetrical) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBY6_PELHB
HIT family hydrolase {ECO:0000313|EMBL:KFL32499.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
bis(5'-nucleosyl)-tetraphosphatase (asymmetrical)
SCN18_25_8_15_R2_B_scaffold_1844_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13692..14819)
DNA (1128bp) protein (376aa)
Putative uncharacterized protein n=1 Tax=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) RepID=A1DJ21_NEOFI
Uncharacterized protein {ECO:0000313|EMBL:KKB78064.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
SCN18_25_8_15_R2_B_scaffold_1844_14
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14880..15980)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBY5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32497.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1844_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16045..16806)
DNA (762bp) protein (254aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBY4_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL32496.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glycerophosphoryl diester phosphodiesterase
SCN18_25_8_15_R2_B_scaffold_1844_16
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16876..17334)
DNA (459bp) protein (153aa)
Endoribonuclease L-PSP n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBY3_PELHB
Endoribonuclease {ECO:0000313|EMBL:KFL32495.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
endoribonuclease L-PSP
Displaying 16 items

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