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SCN18_25_8_15_R2_B_scaffold_1974

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1974_1
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..3857
DNA (3855bp) protein (1285aa)
Glutamate synthase [NADPH] large chain (Glutamate synthase alpha subunit) eukaryotic ferredoxin-dependent glutamate synthase 1 (GLU1)-like protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWH9_POLGS
Glutamate synthase {ECO:0000313|EMBL:KFL29214.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
gltB; glutamate synthase [NADPH] large chain
SCN18_25_8_15_R2_B_scaffold_1974_2
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4014..5441
DNA (1428bp) protein (476aa)
Glutamate synthase {ECO:0000313|EMBL:KFL29213.1}; EC=1.4.1.13 {ECO:0000313|EMBL:KFL29213.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Glutamate synthase (NADPH) small chain n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC96_PELHB
glutamate synthase (NADPH) small chain
SCN18_25_8_15_R2_B_scaffold_1974_3
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5619..6164
DNA (546bp) protein (182aa)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:KFL29212.1}; EC=2.4.2.8 {ECO:0000313|EMBL:KFL29212.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase id=2645534 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
SCN18_25_8_15_R2_B_scaffold_1974_4
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6246..6638
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2PIJ4_9RHIZ
Lipoprotein {ECO:0000313|EMBL:KKB77186.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1974_5
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6653..7159
DNA (507bp) protein (169aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M7E6_9RHIZ
RNA polymerase sigma factor {ECO:0000313|EMBL:KFL29210.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
prtI; ECF family RNA polymerase sigma factor
SCN18_25_8_15_R2_B_scaffold_1974_6
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7156..7947
DNA (792bp) protein (264aa)
Putative transmembrane anti-sigma factor n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11M25_MESSB
Uncharacterized protein {ECO:0000313|EMBL:KFL29209.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative transmembrane anti-sigma factor
SCN18_25_8_15_R2_B_scaffold_1974_7
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8036..9055)
DNA (1020bp) protein (340aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA00_PELHB
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:KFC69766.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
oligopeptide transport ATP-binding protein OppF
SCN18_25_8_15_R2_B_scaffold_1974_8
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9055..9309)
DNA (255bp) protein (85aa)
Oligopeptide transport ATP-binding protein OppD n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA01_PELHB
Oligopeptide transport ATP-binding protein OppD {ECO:0000313|EMBL:KFC69767.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
oligopeptide transport ATP-binding protein OppD
SCN18_25_8_15_R2_B_scaffold_1974_9
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9306..10028)
DNA (723bp) protein (241aa)
oppD; oligopeptide ABC transporter, ATP-binding protein (EC:3.6.3.-)
Oligopeptide transporter subunit ATP-binding component of ABC superfamily n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PVV8_9RHIZ
Oligopeptide transporter ATP-binding component {ECO:0000313|EMBL:KKB07505.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
SCN18_25_8_15_R2_B_scaffold_1974_10
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10028..10948)
DNA (921bp) protein (307aa)
peptide ABC transporter permease n=1 Tax=Rhizobium RepID=UPI00036D5A74
Oligopeptide transport system permease protein OppC {ECO:0000313|EMBL:KFC69768.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
oppC; oligopeptide ABC transporter permease protein OppC
SCN18_25_8_15_R2_B_scaffold_1974_11
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10948..11871)
DNA (924bp) protein (308aa)
ABC transporter n=1 Tax=Aureimonas ureilytica RepID=UPI0003665265
Oligopeptide transporter permease {ECO:0000313|EMBL:KKB10954.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter
SCN18_25_8_15_R2_B_scaffold_1974_12
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11978..13594)
DNA (1617bp) protein (539aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000360ECA3
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFL29206.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
oppA; oligopeptide ABC transporter substrate-binding protein OppA
SCN18_25_8_15_R2_B_scaffold_1974_13
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13919..14080)
DNA (162bp) protein (54aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC69771.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
SCN18_25_8_15_R2_B_scaffold_1974_14
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14077..15363)
DNA (1287bp) protein (429aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KFL29205.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KFL29205.1};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
3-ketoacyl-CoA thiolase / acetyl-CoA acetyltransferase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA05_PELHB
3-ketoacyl-CoA thiolase
SCN18_25_8_15_R2_B_scaffold_1974_15
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15377..17338)
DNA (1962bp) protein (654aa)
Alpha-subunit of fatty acid oxidation complex n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA06_PELHB
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL29204.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
alpha-subunit of fatty acid oxidation complex
SCN18_25_8_15_R2_B_scaffold_1974_16
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17377..19896)
DNA (2520bp) protein (840aa)
Butyryl-CoA dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA07_PELHB
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KFL29203.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
butyryl-CoA dehydrogenase
SCN18_25_8_15_R2_B_scaffold_1974_17
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20213..21928
DNA (1716bp) protein (572aa)
Long-chain-fatty-acid--CoA ligase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA08_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL29199.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
long-chain-fatty-acid--CoA ligase
SCN18_25_8_15_R2_B_scaffold_1974_18
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21925..22317
DNA (393bp) protein (131aa)
Putative transcriptional regulator LiuR of leucine degradation pathway, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RA09_PELHB
MerR family transcriptional regulator {ECO:0000313|EMBL:KFL29198.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
putative transcriptional regulator LiuR of leucine degradation pathway, MerR family
SCN18_25_8_15_R2_B_scaffold_1974_19
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22321..22854
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8H0_RHISN
Uncharacterized protein {ECO:0000313|EMBL:KFL29197.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1974_20
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22885..24456)
DNA (1572bp) protein (524aa)
ATP-dependent DNA ligase LigC n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY5_PELHB
ATP-dependent DNA ligase {ECO:0000313|EMBL:KFL29196.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ATP-dependent DNA ligase LigC
SCN18_25_8_15_R2_B_scaffold_1974_21
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24453..25454)
DNA (1002bp) protein (334aa)
mRNA 3-end processing factor n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RGY4_PELHB
Beta-lactamase {ECO:0000313|EMBL:KFL29195.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
mRNA 3-end processing factor
Displaying 21 items

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