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SCN18_25_8_15_R2_B_scaffold_2473

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2473_1
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(132..698)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CEY2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKC31227.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2473_2
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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804..2120
DNA (1317bp) protein (439aa)
ATPase, AAA family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC10_PELHB
ATPase AAA {ECO:0000313|EMBL:KFL31805.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ATPase AAA
SCN18_25_8_15_R2_B_scaffold_2473_3
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2127..3245)
DNA (1119bp) protein (373aa)
hypothetical protein n=1 Tax=Desulfobacter curvatus RepID=UPI0003748CC9
Uncharacterized protein {ECO:0000313|EMBL:KKC39371.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2473_4
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3431..3733
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI00035C2685
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
camphor resistance protein CrcB
SCN18_25_8_15_R2_B_scaffold_2473_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3730..4719
DNA (990bp) protein (330aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Pseudouridine synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC09_PELHB
ribosomal large subunit pseudouridine synthase C
SCN18_25_8_15_R2_B_scaffold_2473_6
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4716..5381
DNA (666bp) protein (222aa)
Phosphoglycolate phosphatase-like protein, clustered with ribosomal large subunit pseudouridine synthase C n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC08_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31808.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
phosphoglycolate phosphatase-like protein, clustered with ribosomal large subunit pseudouridine synthase C
SCN18_25_8_15_R2_B_scaffold_2473_7
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5383..6162
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC07_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31809.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2473_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6159..6593)
DNA (435bp) protein (145aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC06_PELHB
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:KFL31810.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
SCN18_25_8_15_R2_B_scaffold_2473_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6590..6973)
DNA (384bp) protein (128aa)
Dihydroneopterin aldolase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC05_PELHB
Dienelactone hydrolase {ECO:0000313|EMBL:KFL31811.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
dihydroneopterin aldolase
SCN18_25_8_15_R2_B_scaffold_2473_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7051..7893)
DNA (843bp) protein (281aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
Dihydropteroate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC04_PELHB
dihydropteroate synthase
SCN18_25_8_15_R2_B_scaffold_2473_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8056..8865)
DNA (810bp) protein (270aa)
sulfate/thiosulfate transporter permease subunit n=1 Tax=Ochrobactrum anthropi RepID=UPI0002894BE2
Sulfate ABC transporter permease {ECO:0000313|EMBL:KFL31813.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sulfate ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_2473_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8865..9701)
DNA (837bp) protein (279aa)
Sulfate ABC transporter, permease protein CysT n=3 Tax=Ochrobactrum RepID=C4WEC5_9RHIZ
Sulfate/thiosulfate transporter subunit {ECO:0000313|EMBL:KFL31814.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cysT; sulfate ABC transporter, permease protein CysT
SCN18_25_8_15_R2_B_scaffold_2473_13
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9769..10752)
DNA (984bp) protein (328aa)
Sulfate ABC transporter sulfate-binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q8E4_9RHIZ
Thiosulfate transporter subunit {ECO:0000313|EMBL:KFL31815.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
sulfate-binding protein precursor
SCN18_25_8_15_R2_B_scaffold_2473_14
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10927..11838)
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Rhodospirillum rubrum RepID=Q2RNC1_RHORT
Uncharacterized protein {ECO:0000313|EMBL:KFL31816.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_2473_15
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11901..12701)
DNA (801bp) protein (267aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC03_PELHB
ribosomal protein S12p Asp88 methylthiotransferase
Displaying 15 items

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