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SCN18_25_8_15_R2_B_scaffold_2672

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2672_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25..933)
DNA (909bp) protein (303aa)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
kdgD; 5-dehydro-4-deoxyglucarate dehydratase (EC:4.2.1.41)
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TT14_9BRAD
SCN18_25_8_15_R2_B_scaffold_2672_2
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1139..3040
DNA (1902bp) protein (634aa)
ABC transporter substrate binding protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1N3_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:KFL31294.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter substrate binding protein (oligopeptide)
SCN18_25_8_15_R2_B_scaffold_2672_3
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3100..4083
DNA (984bp) protein (328aa)
ABC transporter membrane spanning protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1N2_AGRVS
ABC transporter permease {ECO:0000313|EMBL:KFL31295.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptide ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_2672_4
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4080..5231
DNA (1152bp) protein (384aa)
ABC transporter membrane spanning protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1N1_AGRVS
Peptide ABC transporter permease {ECO:0000313|EMBL:KFL31296.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
peptide ABC transporter permease
SCN18_25_8_15_R2_B_scaffold_2672_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5239..6912
DNA (1674bp) protein (558aa)
ABC transporter nucleotide binding/ATPase protein (Oligopeptide) n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1N0_AGRVS
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL31297.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter nucleotide binding/ATPase (oligopeptide)
SCN18_25_8_15_R2_B_scaffold_2672_6
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6923..7726
DNA (804bp) protein (268aa)
UDP-glucose 4-epimerase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RD32_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL31298.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
UDP-glucose 4-epimerase
SCN18_25_8_15_R2_B_scaffold_2672_7
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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7812..9110
DNA (1299bp) protein (433aa)
proline iminopeptidase (EC:3.4.11.5)
Putative proline iminopeptidase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V6M5_9RHIZ
Proline iminopeptidase {ECO:0000313|EMBL:KKB80632.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
SCN18_25_8_15_R2_B_scaffold_2672_8
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9129..9866)
DNA (738bp) protein (246aa)
Oligopeptide transport ATP-binding protein OppF n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPR3_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB83461.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
putative ATP-binding component of ABC transporter
SCN18_25_8_15_R2_B_scaffold_2672_9
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9863..10711)
DNA (849bp) protein (283aa)
Dipeptide transport ATP-binding protein DppD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS97_9RHIZ
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:KKC39293.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
dipeptide ABC transporter, ATP-binding protein
SCN18_25_8_15_R2_B_scaffold_2672_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10708..11598)
DNA (891bp) protein (297aa)
Putative D,D-dipeptide transport system permease protein DdpC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWY4_9RHIZ
D-ala-D-ala transporter subunit {ECO:0000313|EMBL:KKB76875.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative transmembrane component of ABC transporter
SCN18_25_8_15_R2_B_scaffold_2672_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12763..14352)
DNA (1590bp) protein (530aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036A5414
Uncharacterized protein {ECO:0000313|EMBL:KKB76836.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
ABC transporter, periplasmic oligopeptide-binding protein
SCN18_25_8_15_R2_B_scaffold_2672_12
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14349..14981)
DNA (633bp) protein (211aa)
XRE family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D128_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKB83465.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insulae DS-56.;"
transcriptional regulator, XRE family
Displaying 12 items

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