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SCN18_25_8_15_R2_B_scaffold_4258

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_4258_1
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..423
DNA (423bp) protein (141aa)
LacI family transcriptional regulator n=1 Tax=Halomonas lutea RepID=UPI0003795C18
Uncharacterized protein {ECO:0000313|EMBL:CDP52691.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
regulatory protein LacI
SCN18_25_8_15_R2_B_scaffold_4258_2
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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515..1789
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Actinomyces vaccimaxillae RepID=UPI0003B52540
Uncharacterized protein {ECO:0000313|EMBL:KFL25595.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
family 1 extracellular solute-binding protein
SCN18_25_8_15_R2_B_scaffold_4258_3
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1813..2667
DNA (855bp) protein (285aa)
Putative transmembrane permease MsmF n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RAM0_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:KFL25596.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
binding-protein-dependent transport systems inner membrane component
SCN18_25_8_15_R2_B_scaffold_4258_4
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2667..3503
DNA (837bp) protein (279aa)
ABC transporter, permease protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RU47_LEIAQ
Sugar ABC transporter, permease protein {ECO:0000313|EMBL:CDP52688.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
binding-protein-dependent transport systems inner membrane component
SCN18_25_8_15_R2_B_scaffold_4258_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3506..4453
DNA (948bp) protein (316aa)
Inosine-uridine preferring nucleoside hydrolase {ECO:0000313|EMBL:CDP52687.1}; EC=3.2.2.1 {ECO:0000313|EMBL:CDP52687.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DAG2_BRAJP
nucleoside hydrolase
SCN18_25_8_15_R2_B_scaffold_4258_6
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4534..5262
DNA (729bp) protein (243aa)
Ribitol 2-dehydrogenase {ECO:0000313|EMBL:CDP52686.1}; EC=1.1.1.56 {ECO:0000313|EMBL:CDP52686.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Glucose/ribitol dehydrogenase n=206 Tax=Brucella RepID=B2SBW8_BRUA1
Ribitol 2-dehydrogenase
SCN18_25_8_15_R2_B_scaffold_4258_7
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5264..6886
DNA (1623bp) protein (541aa)
D-ribulokinase {ECO:0000313|EMBL:CDP52685.1}; EC=2.7.1.47 {ECO:0000313|EMBL:CDP52685.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
UPI0003D005F1 related cluster n=1 Tax=unknown RepID=UPI0003D005F1
FGGY family carbohydrate kinase protein
SCN18_25_8_15_R2_B_scaffold_4258_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7087..8121)
DNA (1035bp) protein (345aa)
Arabinose efflux permease family protein n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2IW47_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EIF34949.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
major facilitator superfamily transporter
SCN18_25_8_15_R2_B_scaffold_4258_9
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8295..9197
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IEL7_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:CCA90742.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCN18_25_8_15_R2_B_scaffold_4258_trna_1
unknown

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comp(9292..9362)
DNA (71bp)
transferRNA Gln
SCN18_25_8_15_R2_B_scaffold_4258_10
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9456..10772
DNA (1317bp) protein (439aa)
Exopolyphosphatase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFU9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC34672.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
exopolyphosphatase
SCN18_25_8_15_R2_B_scaffold_4258_11
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10762..10974
DNA (213bp) protein (71aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; rRNA (uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RFV0_PELHB
cell division protein FtsJ / ribosomal RNA large subunit methyltransferase J
Displaying 12 items

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