ggKbase home page

SCN18_25_8_15_R2_B_scaffold_3651

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_3651_1
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1..1548
DNA (1548bp) protein (516aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00012840};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
Methionine--tRNA ligase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0J6_9RHIZ
methionyl-tRNA synthetase
SCN18_25_8_15_R2_B_scaffold_3651_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1548..2348
DNA (801bp) protein (267aa)
LuxR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI00037DBEDC
TatD-related deoxyribonuclease {ECO:0000313|EMBL:KFC68869.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
TatD family hydrolase
SCN18_25_8_15_R2_B_scaffold_3651_3
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2358..3161
DNA (804bp) protein (268aa)
Beta-lactamase-like protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UB33_METS4
Metal-dependent hydrolase PhnP {ECO:0000313|EMBL:KFC68868.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
beta-lactamase-like protein
SCN18_25_8_15_R2_B_scaffold_3651_4
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3189..3536)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U8H0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN88874.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_3651_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3795..5147)
DNA (1353bp) protein (451aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
homogentisate 1,2-dioxygenase (EC:1.13.11.5)
Homogentisate 1,2-dioxygenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLC9_9RHIZ
SCN18_25_8_15_R2_B_scaffold_3651_6
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5254..5688
DNA (435bp) protein (145aa)
Transcriptional regulator, MarR family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FI6_MESSB
MarR family transcriptional regulator {ECO:0000313|EMBL:KFG69052.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
MarR family transcriptional regulator
SCN18_25_8_15_R2_B_scaffold_3651_7
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5919..6638
DNA (720bp) protein (240aa)
Protocatechuate 3,4-dioxygenase, beta subunit n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV86_CAUSK
protocatechuate 3,4-dioxygenase subunit beta
Protocatechuate 3,4-dioxygenase, beta subunit {ECO:0000313|EMBL:ABZ72976.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_25_8_15_R2_B_scaffold_3651_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6622..7323
DNA (702bp) protein (234aa)
protocatechuate 3,4-dioxygenase subunit alpha (EC:1.13.11.3)
Protocatechuate 3,4-dioxygenase subunit alpha n=1 Tax=Sphingomonas sp. LH128 RepID=J8V8D2_9SPHN
Protocatechuate 3,4-dioxygenase subunit alpha {ECO:0000313|EMBL:EJU09117.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
SCN18_25_8_15_R2_B_scaffold_3651_9
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7508..11056)
DNA (3549bp) protein (1183aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
transcription-repair coupling factor n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D4ADB3
transcription-repair coupling factor
SCN18_25_8_15_R2_B_scaffold_3651_10
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11177..11473)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IKD9_METNO
Uncharacterized protein {ECO:0000313|EMBL:KFC70310.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_3651_11
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11645..12157
DNA (513bp) protein (171aa)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:KFC70311.1}; EC=3.6.1.- {ECO:0000313|EMBL:KFC70311.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ATP-dependent DNA helicase RecG n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY73_9RHIZ
ATP-dependent DNA helicase RecG
Displaying 11 items

View Taxonomy