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SCN18_25_8_15_R2_B_scaffold_1524

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1524_1
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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218..676
DNA (459bp) protein (153aa)
SCN18_25_8_15_R2_B_scaffold_1524_2
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(713..2005)
DNA (1293bp) protein (431aa)
Peptidase M20 n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EXC8_EMTOG
peptidase M20
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
SCN18_25_8_15_R2_B_scaffold_1524_3
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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2170..3561
DNA (1392bp) protein (464aa)
cytochrome D ubiquinol oxidase subunit I n=1 Tax=Lewinella cohaerens RepID=UPI000381351D
Cytochrome d ubiquinol oxidase subunit I {ECO:0000313|EMBL:GAO42136.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
cytochrome bd quinol oxidase subunit 1
SCN18_25_8_15_R2_B_scaffold_1524_4
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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3610..4644
DNA (1035bp) protein (345aa)
Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y4A9_9SPHI
Cytochrome d ubiquinol oxidase subunit II {ECO:0000313|EMBL:GAO42135.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
cytochrome d ubiquinol oxidase, subunit II
SCN18_25_8_15_R2_B_scaffold_1524_5
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4841..4972
DNA (132bp) protein (44aa)
SCN18_25_8_15_R2_B_scaffold_1524_6
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(5593..11685)
DNA (6093bp) protein (2031aa)
Alpha-2-macroglobulin domain protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NJA0_9SPHI
alpha-2-macroglobulin
Alpha-2-macroglobulin {ECO:0000313|EMBL:AHF14131.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
SCN18_25_8_15_R2_B_scaffold_1524_7
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(12630..13865)
DNA (1236bp) protein (412aa)
PUA domain containing protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THC4_NIAKG
PUA domain containing protein
PUA domain containing protein {ECO:0000313|EMBL:AEW01734.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_25_8_15_R2_B_scaffold_1524_8
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14027..14599
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003827B0B
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
protein grpE
SCN18_25_8_15_R2_B_scaffold_1524_9
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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14652..15803
DNA (1152bp) protein (384aa)
Chaperone protein DnaJ n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PR67_CHIPD
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
chaperone protein DnaJ
SCN18_25_8_15_R2_B_scaffold_1524_10
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15805..16224)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Leptolyngbya sp. PCC 6406 RepID=L8L4W0_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:KHD04168.1}; TaxID=1003181 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiomargarita.;" source="Candidatus Thiomargarita nelsonii.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1524_11
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16384..17571)
DNA (1188bp) protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7W9_NIAKG
integral membrane sensor signal transduction histidine kinase
SCN18_25_8_15_R2_B_scaffold_1524_12
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

17630..18697
DNA (1068bp) protein (356aa)
Glycosyl transferase family 2 n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7X0_NIAKG
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AEV96908.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
SCN18_25_8_15_R2_B_scaffold_1524_13
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18746..18949
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) PF11_CHIPD">RepID=C7PF11_CHIPD
Uncharacterized protein {ECO:0000313|EMBL:KIC93118.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1524_trna_1
unknown

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19063..19135
DNA (73bp)
transferRNA Gly
SCN18_25_8_15_R2_B_scaffold_1524_trna_2
unknown

Not on your lists

19181..19266
DNA (86bp)
transferRNA Leu
SCN18_25_8_15_R2_B_scaffold_1524_14
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19450..19641)
DNA (192bp) protein (64aa)
SCN18_25_8_15_R2_B_scaffold_1524_15
SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(20626..20838)
DNA (213bp) protein (71aa)
Two-component system-sensor histidine kinase id=4625287 bin=GWF2_WWE1_40_14 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_WWE1_40_14 organism_group=WWE1
PAS domain-containing protein
Tax=GWF2_WWE1X_40_14_curated
Displaying 17 items

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