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SCN18_25_8_15_R2_B_scaffold_428_72

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 82886..83461

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Cytophagales str. B6 RepID=UPI0003B49EEB similarity UNIREF
DB: UNIREF100
  • Identity: 52.3
  • Coverage: 176.0
  • Bit_score: 176
  • Evalue 2.50e-41
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO43435.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.5
  • Coverage: 167.0
  • Bit_score: 171
  • Evalue 6.50e-40
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 45.3
  • Coverage: 192.0
  • Bit_score: 166
  • Evalue 4.20e-39

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 576
GTGAAACAAGCACAAACCGGGAGTAAGGATACTAAGTCTGCAGTAACAGCATCTTCTTTTGAAACAATCTTTAAAACTCTTTACAAAGAATTGTTTGGTTATGCGTGCACACTTATTAAACATGAGCCGGCTGCAGAAGGAATAGTGCAACAGGTGTTTTTAAACCTGTGGAGCAACAGAGATACGCTGGTAATAGATATTTCCATAAAAGCATACCTGTATAAATCGGTTTATAATTACTGTCTTAATTACCTGAAACATCAGCAGGTAAGATCCGCGCATGAAAAATATATTGCAAAACAATTGCCTGTTCATGCAGTTAATACCGAAGGCAAAGTGCTTGGCGAAGAATTACGATCGCATATACTTGAAGCATTGAATGCGTTGCCTGAGCAGTGCGGCATTGTTTTCAGGATGAGCAGATTTGAAGGACTGAAATACCAGGAAATAGCTGATAAACTTGGGCTTTCCGTTAAAACCATAGAGGTGCAGATGGGCAAAGCTTTGCGGCTGATGCGGGCAAGGCTTGCAGAATACCTGTCAATAACAATTGGGATAGTTATGCTTACCGGATAG
PROTEIN sequence
Length: 192
VKQAQTGSKDTKSAVTASSFETIFKTLYKELFGYACTLIKHEPAAEGIVQQVFLNLWSNRDTLVIDISIKAYLYKSVYNYCLNYLKHQQVRSAHEKYIAKQLPVHAVNTEGKVLGEELRSHILEALNALPEQCGIVFRMSRFEGLKYQEIADKLGLSVKTIEVQMGKALRLMRARLAEYLSITIGIVMLTG*