ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1674

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1674_1
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..371)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VPM0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EJU09356.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_2
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(368..988)
DNA (621bp) protein (207aa)
Riboflavin synthase {ECO:0000313|EMBL:AKH43967.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AKH43967.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
riboflavin synthase subunit alpha (EC:2.5.1.9)
riboflavin synthase subunit alpha n=1 Tax=Citromicrobium sp. JLT1363 RepID=UPI000225EDE7
SCN18_25_8_15_R2_B_scaffold_1674_3
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(998..1957)
DNA (960bp) protein (320aa)
Riboflavin biosynthesis protein RibD n=1 Tax=Novosphingobium sp. AP12 RepID=J2PV07_9SPHN
Riboflavin biosynthesis protein RibD {ECO:0000313|EMBL:KHL25068.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
riboflavin biosynthesis protein RibD
SCN18_25_8_15_R2_B_scaffold_1674_4
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1950..2417)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKH5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43969.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_5
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2504..3226)
DNA (723bp) protein (241aa)
Putative metal-dependent hydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y784_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43970.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_6
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3223..3666)
DNA (444bp) protein (148aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000319EE4E
Uncharacterized protein {ECO:0000313|EMBL:AKH43971.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_7
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3654..4250)
DNA (597bp) protein (199aa)
Copper chaperone SCO1/SenC family protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2T1_9SPHN
Copper chaperone SCO1/SenC family protein {ECO:0000313|EMBL:GAD49063.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
electron transporter
SCN18_25_8_15_R2_B_scaffold_1674_8
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4344..4967
DNA (624bp) protein (208aa)
Ankyrin n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G4D5_NOVAD
Ankyrin repeats (3 copies) {ECO:0000313|EMBL:AKH43973.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ankyrin
SCN18_25_8_15_R2_B_scaffold_1674_9
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4969..5616
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Erythrobacter sp. SD-21 RepID=A5PEP8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43974.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_10
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5678..5917
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00036638CB
FeoA domain protein {ECO:0000313|EMBL:AKH43975.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_11
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5914..7767
DNA (1854bp) protein (618aa)
Ferrous iron transport protein B n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YL32_9SPHN
Ferrous iron transport protein B {ECO:0000313|EMBL:AKH43976.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
ferrous iron transport protein B
SCN18_25_8_15_R2_B_scaffold_1674_12
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7894..8418
DNA (525bp) protein (175aa)
Single-stranded DNA-binding protein n=1 Tax=Sphingomonas sp. LH128 RepID=J8VZF2_9SPHN
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
single-strand binding protein
SCN18_25_8_15_R2_B_scaffold_1674_13
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8432..8953)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZUL2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43978.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_14
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8950..9474)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YKI4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD49070.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_15
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9600..10070
DNA (471bp) protein (157aa)
SmpA/OmlA n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EEM9_9SPHN
Membrane protein SmpA {ECO:0000313|EMBL:KHL24438.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercurialis.;"
membrane protein SmpA
SCN18_25_8_15_R2_B_scaffold_1674_16
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10179..10739
DNA (561bp) protein (187aa)
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
ATP-dependent protease subunit HslV n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0H5G1_9SPHN
peptidase
SCN18_25_8_15_R2_B_scaffold_1674_17
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10852..12153
DNA (1302bp) protein (434aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A2T8_9SPHN
ATP-dependent protease ATPase subunit HslU {ECO:0000256|SAAS:SAAS00089650}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
ATP-dependent protease
SCN18_25_8_15_R2_B_scaffold_1674_18
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12154..12696)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R716_PELHB
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
SCN18_25_8_15_R2_B_scaffold_1674_19
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12693..13193)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Alteromonas sp. (strain SN2) RepID=F5ZDG0_ALTSS
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_57_10_curated
SCN18_25_8_15_R2_B_scaffold_1674_20
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13256..13825)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9CB94_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AKH43986.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
SCN18_25_8_15_R2_B_scaffold_1674_21
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13822..15642)
DNA (1821bp) protein (607aa)
Putative multidrug export ATP-binding/permease protein {ECO:0000313|EMBL:AKH43988.1}; EC=3.6.3.- {ECO:0000313|EMBL:AKH43988.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
Putative ABC transporter permease/ATP-binding protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2Y799_9SPHN
ABC transporter-like protein
SCN18_25_8_15_R2_B_scaffold_1674_22
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15694..16668)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Erythrobacter litoralis (strain HTCC2594) RepID=Q2NDV0_ERYLH
Uncharacterized protein {ECO:0000313|EMBL:AKH43989.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_25_8_15_R2_B_scaffold_1674_16S_1
unknown

Not on your lists

17424..18905
DNA (1482bp)
16S ribosomal RNA (16S rRNA)
Displaying 23 items

View Taxonomy