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SCN18_25_8_15_R2_B_scaffold_467

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Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_467_1
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..373
DNA (372bp) protein (124aa)
Conjugal transfer protein n=2 Tax=Comamonadaceae RepID=A9BTR6_DELAS
Conjugal transfer protein TrbF {ECO:0000313|EMBL:GAO21052.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer protein TrbF
SCN18_25_8_15_R2_B_scaffold_467_2
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

370..1374
DNA (1005bp) protein (335aa)
P-type conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P833_PSEAI
p-type conjugative transfer protein TrbG {ECO:0000313|EMBL:GAO26453.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
p-type conjugative transfer protein trbg
SCN18_25_8_15_R2_B_scaffold_467_3
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1377..2648
DNA (1272bp) protein (424aa)
Conjugation TrbI family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV25_ALIDB
conjugation trbi family protein
Conjugation TrbI family protein {ECO:0000313|EMBL:ADV00557.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_467_4
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2645..2887
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV24_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00556.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_467_5
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3498..4403
DNA (906bp) protein (302aa)
cysteine synthase (EC:2.5.1.47)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Cysteine synthase B n=2 Tax=Alicycliphilus denitrificans RepID=E8TV23_ALIDB
SCN18_25_8_15_R2_B_scaffold_467_6
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4409..4972
DNA (564bp) protein (188aa)
NUDIX hydrolase n=2 Tax=Alicycliphilus denitrificans RepID=E8TV22_ALIDB
NUDIX hydrolase
NUDIX hydrolase {ECO:0000313|EMBL:ADV00554.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_467_7
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4978..5205
DNA (228bp) protein (76aa)
SirA family protein n=2 Tax=Acidovorax RepID=A1W9W4_ACISJ
sira family protein
SirA family protein {ECO:0000313|EMBL:ACM33821.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCN18_25_8_15_R2_B_scaffold_467_8
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5287..6171)
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
UTP-glucose-1-phosphate uridylyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TV20_ALIDB
UTP-glucose-1-phosphate uridylyltransferase
SCN18_25_8_15_R2_B_scaffold_467_9
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(6279..9185)
DNA (2907bp) protein (969aa)
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Valine--tRNA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G3W9_ALIDK
SCN18_25_8_15_R2_B_scaffold_467_10
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9336..10088)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWW3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98313.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Transcriptional regulator, GntR family
SCN18_25_8_15_R2_B_scaffold_467_11
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10357..11601
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EIK3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98314.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
SCN18_25_8_15_R2_B_scaffold_467_12
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11726..12667
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CZ37_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98315.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
High-affinity branched-chain amino acid transport system permease protein LivH
SCN18_25_8_15_R2_B_scaffold_467_13
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12676..13965
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DM32_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98316.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Branched-chain amino acid transport system permease protein LivM
SCN18_25_8_15_R2_B_scaffold_467_14
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13962..14732
DNA (771bp) protein (257aa)
ABC transporter related protein n=1 Tax=uncultured bacterium RepID=K2DJX3_9BACT
ABC transporter related protein {ECO:0000313|EMBL:EKD98317.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ABC transporter
SCN18_25_8_15_R2_B_scaffold_467_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14729..15451
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DWW8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98318.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Branched-chain amino acid transport ATP-binding protein LivF
SCN18_25_8_15_R2_B_scaffold_467_16
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15448..16275
DNA (828bp) protein (276aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EIK6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD98319.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCN18_25_8_15_R2_B_scaffold_467_17
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16381..18570
DNA (2190bp) protein (730aa)
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (EC:1.2.4.4)
2-oxoisovalerate dehydrogenase subunit beta n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S2I2_9BURK
2-oxoisovalerate dehydrogenase subunit beta {ECO:0000313|EMBL:EHP43230.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
SCN18_25_8_15_R2_B_scaffold_467_18
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18582..19067
DNA (486bp) protein (162aa)
Lactoylglutathione lyase (EC:4.4.1.5)
bleomycin resistance protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035E0463
Bleomycin resistance protein {ECO:0000313|EMBL:KDP84570.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCN18_25_8_15_R2_B_scaffold_467_19
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19069..20319
DNA (1251bp) protein (417aa)
Acetyltransferase component of pyruvate dehydrogenase complex {ECO:0000256|RuleBase:RU361137}; EC=2.3.1.12 {ECO:0000256|RuleBase:RU361137};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC:2.3.1.12)
branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Cupriavidus sp. WS RepID=UPI00035E0265
SCN18_25_8_15_R2_B_scaffold_467_20
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20496..21899
DNA (1404bp) protein (468aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC:1.8.1.4)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035F8C48
SCN18_25_8_15_R2_B_scaffold_467_21
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21914..22657
DNA (744bp) protein (248aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S2I7_9BURK
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KDP84573.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCN18_25_8_15_R2_B_scaffold_467_22
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22671..24140
DNA (1470bp) protein (490aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:CDI03276.1}; EC=1.2.1.- {ECO:0000313|EMBL:CDI03276.1};; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Competibacter.;" source="Candidatus Competibacter denitrificans Run_A_D11.;"
Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC:1.2.1.16)
succinate-semialdehyde dehdyrogenase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036A768E
SCN18_25_8_15_R2_B_scaffold_467_23
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24144..24977
DNA (834bp) protein (278aa)
Shikimate 5-dehydrogenase I alpha (EC:1.1.1.25)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036A2392
Shikimate dehydrogenase {ECO:0000313|EMBL:KDP84575.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
SCN18_25_8_15_R2_B_scaffold_467_24
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25024..25623)
DNA (600bp) protein (200aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TV18_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB84031.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_467_25
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25620..26258)
DNA (639bp) protein (213aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TV17_ALIDB
electron transport protein SCO1/SenC
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:AEB84032.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_467_26
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26266..26856)
DNA (591bp) protein (197aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8TV16_ALIDB
cytochrome c class i
Cytochrome c class I {ECO:0000313|EMBL:AEB84033.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_467_27
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26870..27517)
DNA (648bp) protein (216aa)
Cytochrome C oxidase mono-heme subunit/FixO n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV15_ALIDB
cytochrome c oxidase mono-heme subunit/fixo
Cytochrome c oxidase mono-heme subunit/fixo {ECO:0000313|EMBL:GAO22328.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_467_28
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27507..29162)
DNA (1656bp) protein (552aa)
cytochrome-c oxidase (EC:1.9.3.1)
Cytochrome-c oxidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TV14_ALIDB
Cytochrome-c oxidase {ECO:0000313|EMBL:GAO23940.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_467_29
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29404..30693)
DNA (1290bp) protein (430aa)
HemY domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUE0_ALIDB
HemY domain-containing protein
HemY domain protein {ECO:0000313|EMBL:AEB84036.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_467_30
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30719..31798)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TUD9_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00544.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying items 1-30 of 65 in total

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