ggKbase home page

SCN18_25_8_15_R2_B_scaffold_515

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_515_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13..141)
DNA (129bp) protein (43aa)
Exodeoxyribonuclease V, beta subunit {ECO:0000313|EMBL:GAO24671.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
id=12552984 bin=BDI tax=BDI organism_group=Betaproteobacteria
SCN18_25_8_15_R2_B_scaffold_515_2
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(163..1593)
DNA (1431bp) protein (477aa)
processing peptidase (EC:3.4.24.64)
Processing peptidase {ECO:0000313|EMBL:AEB83393.1}; EC=3.4.24.64 {ECO:0000313|EMBL:AEB83393.1};; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Processing peptidase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9H8_ALIDK
SCN18_25_8_15_R2_B_scaffold_515_3
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1623..2747
DNA (1125bp) protein (375aa)
Signal recognition particle receptor FtsY n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1B7_ALIDB
signal recognition particle-docking protein ftsy
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_515_4
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2763..3716)
DNA (954bp) protein (318aa)
Regulatory protein LysR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1B8_ALIDB
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO24793.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_5
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3832..4770
DNA (939bp) protein (313aa)
Dihydrodipicolinate synthetase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1B9_ALIDB
dihydrodipicolinate synthetase
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:ADV01172.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_515_6
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4802..5773
DNA (972bp) protein (324aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9H4_ALIDK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83389.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_515_7
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5763..6467
DNA (705bp) protein (235aa)
3-oxoacyl-ACP reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8U1C1_ALIDB
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:GAO24796.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_8
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6494..7660
DNA (1167bp) protein (389aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9H2_ALIDK
mandelate racemase/muconate lactonizing protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:AEB83387.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_515_9
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7675..8031)
DNA (357bp) protein (119aa)
CutA1 divalent ion tolerance protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1C3_ALIDB
CutA1 divalent ion tolerance protein
CutA1 divalent ion tolerance protein {ECO:0000313|EMBL:GAO24798.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_10
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8163..9134)
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1C5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01178.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_515_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9220..11865
DNA (2646bp) protein (882aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Aconitate hydratase domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U1C6_ALIDB
aconitate hydratase domain-containing protein
SCN18_25_8_15_R2_B_scaffold_515_12
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11846..12817
DNA (972bp) protein (324aa)
GntR domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1C7_ALIDB
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:AEB83382.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_515_13
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12830..13567
DNA (738bp) protein (246aa)
Extracellular solute-binding protein family 3 n=2 Tax=Alicycliphilus denitrificans RepID=E8U1C8_ALIDB
ABC transporter substrate-binding protein
ABC-type transporter, periplasmic component {ECO:0000313|EMBL:GAO24803.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_14
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

13564..14646
DNA (1083bp) protein (361aa)
Lactonase, 7-bladed beta propeller n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9G5_ALIDK
Lactonase {ECO:0000313|EMBL:GAO24804.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
lactonase
SCN18_25_8_15_R2_B_scaffold_515_15
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14649..15716)
DNA (1068bp) protein (356aa)
Alcohol dehydrogenase GroES domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1D0_ALIDB
alcohol dehydrogenase GroES domain-containing protein
Alcohol dehydrogenase GroES domain protein {ECO:0000313|EMBL:AEB83379.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_515_16
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15863..16675)
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI0003794B91
Uncharacterized protein {ECO:0000313|EMBL:KDP84669.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
putative hydrolase
SCN18_25_8_15_R2_B_scaffold_515_17
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16690..17604)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Streptomyces turgidiscabies Car8 RepID=L7EV97_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:ELP62591.1}; TaxID=698760 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces turgidiscabies Car8.;"
peptidase S15
SCN18_25_8_15_R2_B_scaffold_515_18
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17601..18086)
DNA (486bp) protein (162aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Mycobacterium smegmatis JS623 RepID=L0IR95_MYCSM
Uncharacterized protein {ECO:0000313|EMBL:KDP84672.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Zn-dependent hydrolase, glyoxylase
SCN18_25_8_15_R2_B_scaffold_515_19
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18088..18879)
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Rhodococcus opacus M213 RepID=K8XME2_RHOOP
Enoyl-CoA hydratase {ECO:0000313|EMBL:KDR86577.1}; TaxID=1315272 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens GW4.;"
enoyl-CoA hydratase/isomerase
SCN18_25_8_15_R2_B_scaffold_515_20
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18919..19908)
DNA (990bp) protein (330aa)
ABC transporter substrate-binding protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035CE8DE
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJK14148.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
putative exported protein
SCN18_25_8_15_R2_B_scaffold_515_21
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20262..21062)
DNA (801bp) protein (267aa)
IclR family transcriptional regulator n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S902_9BURK
IclR family transcriptional regulator {ECO:0000313|EMBL:KDP84754.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
Transcriptional regulator, IclR family
SCN18_25_8_15_R2_B_scaffold_515_22
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21321..22256
DNA (936bp) protein (312aa)
RNA polymerase sigma factor RpoH n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E1_ALIDB
RNA polymerase sigma factor rpoh
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_23
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22400..23410
DNA (1011bp) protein (337aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E2_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB86285.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_515_24
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23444..24055)
DNA (612bp) protein (204aa)
Electron transport protein SCO1/SenC n=2 Tax=Acidovorax RepID=A1WBL4_ACISJ
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:GAO24820.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
electron transport protein SCO1/SenC
SCN18_25_8_15_R2_B_scaffold_515_25
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24065..24991)
DNA (927bp) protein (309aa)
Protoheme IX farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_00154};; Heme B farnesyltransferase {ECO:0000256|HAMAP-Rule:MF_00154}; Heme O synthase {ECO:0000256|HAMAP-Rule:MF_00154}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Protoheme IX farnesyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E4_ALIDB
protoheme IX farnesyltransferase
SCN18_25_8_15_R2_B_scaffold_515_26
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24988..26145)
DNA (1158bp) protein (386aa)
Cytochrome oxidase assembly n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E5_ALIDB
cytochrome oxidase assembly
Cytochrome oxidase assembly {ECO:0000313|EMBL:GAO24822.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_27
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26142..26897)
DNA (756bp) protein (252aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO24823.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_28
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26839..27606)
DNA (768bp) protein (256aa)
Putative transmembrane cytochrome oxidase n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E7_ALIDB
transmembrane cytochrome oxidase
Putative transmembrane cytochrome oxidase {ECO:0000313|EMBL:AEB86280.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_515_29
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27622..27846
DNA (225bp) protein (75aa)
Putative transmembrane protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E8_ALIDB
transmembrane protein
Transmembrane protein {ECO:0000313|EMBL:GAO24825.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_515_30
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27920..28804)
DNA (885bp) protein (295aa)
Cytochrome c oxidase subunit III n=2 Tax=Alicycliphilus denitrificans RepID=E8U1E9_ALIDB
cytochrome c oxidase subunit iii
Cytochrome c oxidase subunit III {ECO:0000313|EMBL:ADV01202.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying items 1-30 of 71 in total

View Taxonomy