ggKbase home page

SCN18_25_8_15_R2_B_scaffold_540

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_540_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(144..449)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVA6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV01751.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_540_2
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(437..985)
DNA (549bp) protein (183aa)
RES domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVA7_ALIDB
RES domain-containing protein {ECO:0000313|EMBL:GAO25326.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
RES domain-containing protein
SCN18_25_8_15_R2_B_scaffold_540_3
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(982..1353)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVA8_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21134.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_540_4
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2068..2853)
DNA (786bp) protein (262aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
Naphthoate synthase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5V8_9RHOO
menB; naphthoate synthase
SCN18_25_8_15_R2_B_scaffold_540_5
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(2883..4556)
DNA (1674bp) protein (558aa)
3-oxoacid (Glutaconate) CoA-transferase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5V9_9RHOO
3-oxoacid (glutaconate) CoA-transferase
3-oxoacid (Glutaconate) CoA-transferase {ECO:0000313|EMBL:BAL27372.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCN18_25_8_15_R2_B_scaffold_540_6
CN-SCN_Rubrivivax_131x, CN-SCN_Rubrivivax_131x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4633..5379)
DNA (747bp) protein (249aa)
2-hydroxycyclohexane-1-carbonyl-CoA dehydrogenase n=1 Tax=Azoarcus toluclasticus RepID=UPI00036CC353
putative alcohol dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCN18_25_8_15_R2_B_scaffold_540_7
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5420..6178)
DNA (759bp) protein (253aa)
Enoyl-CoA hydratase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W1_9RHOO
fadB; enoyl-CoA hydratase
Enoyl-CoA hydratase {ECO:0000313|EMBL:BAL27374.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCN18_25_8_15_R2_B_scaffold_540_8
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6175..7788)
DNA (1614bp) protein (538aa)
Short-chain acyl-CoA synthetase n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W2_9RHOO
short-chain acyl-CoA synthetase
Short-chain acyl-CoA synthetase {ECO:0000313|EMBL:BAL27375.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
SCN18_25_8_15_R2_B_scaffold_540_9
Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7788..8567)
DNA (780bp) protein (260aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Azoarcus sp. KH32C RepID=H0Q5W3_9RHOO
short-chain dehydrogenase/reductase SDR
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCN18_25_8_15_R2_B_scaffold_540_10
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8601..9743)
DNA (1143bp) protein (381aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BZ73_9BURK
putative acyl-CoA dehydrogenase
Tax=RIFOXYD12_FULL_Burkholderiales_59_19_curated
SCN18_25_8_15_R2_B_scaffold_540_11
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10007..10708)
DNA (702bp) protein (234aa)
Biotin/lipoate A/B protein ligase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG6_ALIDB
Biotin/lipoate A/B protein ligase {ECO:0000313|EMBL:GAO26082.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
biotin/lipoate A/B protein ligase
SCN18_25_8_15_R2_B_scaffold_540_12
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10741..11769
DNA (1029bp) protein (343aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Delta-aminolevulinic acid dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG5_ALIDB
SCN18_25_8_15_R2_B_scaffold_540_13
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11809..12987
DNA (1179bp) protein (393aa)
Mg2 transporter protein CorA family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG4_ALIDB
Mg2 transporter protein CorA family protein
Mg2+ transporter protein CorA family protein {ECO:0000313|EMBL:GAO26080.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_540_14
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13027..14004)
DNA (978bp) protein (326aa)
Uncharacterized protein n=31 Tax=Bordetella RepID=F4L9R6_BORPC
hypothetical protein
Putattive exported protein {ECO:0000313|EMBL:CRE22704.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCN18_25_8_15_R2_B_scaffold_540_15
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14042..15271)
DNA (1230bp) protein (410aa)
Acetyl-CoA C-acyltransferase (EC:2.3.1.16)
Acetyl-CoA C-acyltransferase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K497_CUPNH
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KJK23459.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
SCN18_25_8_15_R2_B_scaffold_540_16
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15317..16462)
DNA (1146bp) protein (382aa)
L-carnitine dehydratase/bile acid-inducible protein F n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46UF0_CUPPJ
L-carnitine dehydratase/bile acid-inducible protein F
L-carnitine dehydratase/bile acid-inducible protein F {ECO:0000313|EMBL:AAZ63234.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCN18_25_8_15_R2_B_scaffold_540_17
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16464..17486)
DNA (1023bp) protein (341aa)
Acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:CAJ95179.1}; EC=2.3.1.9 {ECO:0000313|EMBL:CAJ95179.1};; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
Acetyl-CoA acetyltransferase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K495_CUPNH
SCN18_25_8_15_R2_B_scaffold_540_18
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17496..18629)
DNA (1134bp) protein (378aa)
Acyl-CoA dehydrogenase, N-terminal domain protein 11 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HKC6_ACHXA
Acyl-CoA dehydrogenase, N-terminal domain protein {ECO:0000313|EMBL:KCV63239.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
acyl-CoA dehydrogenase
SCN18_25_8_15_R2_B_scaffold_540_19
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18733..19635
DNA (903bp) protein (301aa)
Regulatory protein, LysR:LysR, substrate-binding protein n=1 Tax=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) RepID=Q46SH9_CUPPJ
LysR family transcriptional regulator
Regulatory protein, LysR:LysR, substrate-binding protein {ECO:0000313|EMBL:AAZ63905.1}; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
SCN18_25_8_15_R2_B_scaffold_540_20
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19676..20644)
DNA (969bp) protein (323aa)
Extra-cytoplasmic solute receptor family protein 127 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HKC8_ACHXA
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGE00384.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
extra-cytoplasmic solute receptor family protein 127
SCN18_25_8_15_R2_B_scaffold_540_21
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20685..21470)
DNA (786bp) protein (262aa)
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase {ECO:0000313|EMBL:CAJ95188.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CAJ95188.1};; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
Enoyl-CoA hydratase n=1 Tax=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) RepID=Q0K486_CUPNH
SCN18_25_8_15_R2_B_scaffold_540_22
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21654..22166
DNA (513bp) protein (171aa)
Regulatory protein MarR n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG3_ALIDB
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:GAO26079.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_540_23
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22199..23620
DNA (1422bp) protein (474aa)
RND efflux system, outer membrane lipoprotein, NodT family n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG2_ALIDB
NodT family RND efflux system outer membrane lipoprotein {ECO:0000313|EMBL:GAO26078.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
NodT family RND efflux system outer membrane lipoprotein
SCN18_25_8_15_R2_B_scaffold_540_24
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23655..24854
DNA (1200bp) protein (400aa)
Secretion protein HlyD family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG1_ALIDB
Secretion protein HlyD family protein {ECO:0000313|EMBL:GAO26077.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
secretion protein HlyD family protein
SCN18_25_8_15_R2_B_scaffold_540_25
SCN_Comamonas_36x, SCN_Comamonas_36x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24857..26425
DNA (1569bp) protein (523aa)
Drug resistance transporter, EmrB/QacA subfamily n=2 Tax=Alicycliphilus denitrificans RepID=E8TVG0_ALIDB
EmrB/QacA subfamily drug resistance transporter
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:AEB82766.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_540_26
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26489..27178)
DNA (690bp) protein (230aa)
carboxymethylenebutenolidase (EC:3.1.1.45)
Carboxymethylenebutenolidase {ECO:0000313|EMBL:ADU98169.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ADU98169.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Carboxymethylenebutenolidase n=2 Tax=Alicycliphilus denitrificans RepID=E8TVF9_ALIDB
SCN18_25_8_15_R2_B_scaffold_540_27
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27230..27976
DNA (747bp) protein (249aa)
glucose-1-dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000370FEE8
Dehydrogenase {ECO:0000313|EMBL:GAD21142.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
short-chain dehydrogenase/reductase sdr
SCN18_25_8_15_R2_B_scaffold_540_28
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27976..28614
DNA (639bp) protein (213aa)
Multiple antibiotic resistance (MarC)-related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVF8_ALIDB
multiple antibiotic resistance (marc)-like protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_540_29
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28565..29101)
DNA (537bp) protein (179aa)
Regulator of ribonuclease activity A n=2 Tax=Alicycliphilus denitrificans RepID=E8TVF7_ALIDB
ribonuclease activity A regulator
Ribonuclease activity A regulator {ECO:0000313|EMBL:GAO26072.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_540_30
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29110..30099)
DNA (990bp) protein (330aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TUU0_ALIDB
Uncharacterized protein {ECO:0000313|EMBL:GAO26071.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
Displaying items 1-30 of 62 in total

View Taxonomy