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SCN18_25_8_15_R2_B_scaffold_1724

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_1724_1
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..856
DNA (855bp) protein (285aa)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XI92_9RALS
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EON18760.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
2-hydroxy-3-oxopropionate reductase
SCN18_25_8_15_R2_B_scaffold_1724_2
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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944..1501
DNA (558bp) protein (186aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAR8_STAND
tripartite ATP-independent periplasmic transporter DctQ component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADH90935.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_25_8_15_R2_B_scaffold_1724_3
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1503..2786
DNA (1284bp) protein (428aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TK61_ACIAC
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ABM31349.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCN18_25_8_15_R2_B_scaffold_1724_4
unknown

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comp(2937..3131)
DNA (195bp) protein (65aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1724_5
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3208..3786
DNA (579bp) protein (193aa)
Transcriptional regulator, LysR family n=2 Tax=Proteobacteria RepID=A1W5P2_ACISJ
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:CAJ23978.1}; TaxID=316273 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. vesicatoria (strain 85-10).;"
SCN18_25_8_15_R2_B_scaffold_1724_6
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3758..4300
DNA (543bp) protein (181aa)
Uncharacterized protein n=3 Tax=Xylella fastidiosa RepID=Q9PCQ9_XYLFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAF84528.1}; TaxID=160492 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella.;" source="Xylella fastidiosa (strain 9a5c).;"
SCN18_25_8_15_R2_B_scaffold_1724_7
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4352..6295)
DNA (1944bp) protein (648aa)
Integrase n=3 Tax=Pseudomonas aeruginosa RepID=U5AKF3_PSEAI
Integrase {ECO:0000313|EMBL:CDM23708.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
integrase
SCN18_25_8_15_R2_B_scaffold_1724_trna_1
unknown

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comp(6525..6597)
DNA (73bp)
transferRNA Gly
SCN18_25_8_15_R2_B_scaffold_1724_8
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6751..7980
DNA (1230bp) protein (410aa)
Major facilitator superfamily MFS_1 n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW1_ALIDB
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB83946.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_1724_9
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7996..8268)
DNA (273bp) protein (91aa)
Histone family protein nucleoid-structuring protein H-NS n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW2_ALIDB
histone family protein nucleoid-structuring protein H-NS
Histone family protein nucleoid-structuring protein H-NS {ECO:0000313|EMBL:GAO21963.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1724_10
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8350..9147
DNA (798bp) protein (266aa)
Regulatory protein IclR n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW3_ALIDB
IclR family transcriptional regulator
Regulatory protein IclR {ECO:0000313|EMBL:ADV00627.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1724_11
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9403..10176
DNA (774bp) protein (258aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW4_ALIDB
short-chain dehydrogenase/reductase sdr
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ADV00628.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1724_12
SCN_Thiomonas_15x, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10204..11430
DNA (1227bp) protein (409aa)
Acyl-CoA dehydrogenase domain-containing protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW5_ALIDB
acyl-CoA dehydrogenase
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:GAO21960.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1724_13
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11440..13140
DNA (1701bp) protein (567aa)
AMP-dependent synthetase and ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVW6_ALIDB
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADV00630.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
AMP-dependent synthetase/ligase
SCN18_25_8_15_R2_B_scaffold_1724_14
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13261..14427)
DNA (1167bp) protein (389aa)
Extracellular ligand-binding receptor n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW7_ALIDB
extracellular ligand-binding receptor
ABC transporter periplasmic protein {ECO:0000313|EMBL:GAO24127.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1724_15
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14471..15178)
DNA (708bp) protein (236aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW8_ALIDB
ABC transporter
ABC transporter ATPase {ECO:0000313|EMBL:GAO21957.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1724_16
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15165..15929)
DNA (765bp) protein (255aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TVW9_ALIDB
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADV00633.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1724_17
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15916..16890)
DNA (975bp) protein (325aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TVX0_ALIDB
ABC transporter permease
Inner-membrane translocator {ECO:0000313|EMBL:ADV00634.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_1724_18
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16891..17754)
DNA (864bp) protein (288aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TVX1_ALIDB
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:GAO24131.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCN18_25_8_15_R2_B_scaffold_1724_19
unknown

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comp(18017..18202)
DNA (186bp) protein (62aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_1724_20
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18253..18402)
DNA (150bp) protein (50aa)
electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:AEB84881.1}; EC=1.5.5.1 {ECO:0000313|EMBL:AEB84881.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDY7_ALIDK
Displaying 21 items

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