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SCN18_25_8_15_R2_B_scaffold_2408

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_2408_1
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(252..977)
DNA (726bp) protein (242aa)
Histidine utilization repressor n=2 Tax=Alicycliphilus denitrificans RepID=E8TUA4_ALIDB
histidine utilization repressor
Histidine utilization repressor {ECO:0000313|EMBL:ADV00509.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2408_2
Acinetobacter sp. NIPH 809_SCNpilot_P_inoc_Acinetobacter_41_9_partial, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1123..2601
DNA (1479bp) protein (493aa)
Permease for cytosine/purines uracil thiamine allantoin n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4N7_ALIDK
cytosine/purines uracil thiamine allantoin permease
Permease for cytosine/purines uracil thiamine allantoin {ECO:0000313|EMBL:AEB84082.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2408_3
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2645..4366
DNA (1722bp) protein (574aa)
Urocanate hydratase {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632}; Short=Urocanase {ECO:0000256|HAMAP-Rule:MF_00577};; EC=4.2.1.49 {ECO:0000256|HAMAP-Rule:MF_00577, ECO:0000256|SAAS:SAAS00011632};; Imidazolonepropionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00577}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
urocanate hydratase (EC:4.2.1.49)
Urocanate hydratase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4N8_ALIDK
SCN18_25_8_15_R2_B_scaffold_2408_4
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4462..5235
DNA (774bp) protein (258aa)
Regulatory protein IclR n=2 Tax=Alicycliphilus denitrificans RepID=E8TUA1_ALIDB
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEB84084.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2408_5
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5279..6034
DNA (756bp) protein (252aa)
ABC-type transporter, periplasmic subunit family 3 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4P0_ALIDK
ABC transporter substrate-binding protein
ABC-type transporter, periplasmic subunit family 3 {ECO:0000313|EMBL:AEB84085.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2408_6
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6056..6724
DNA (669bp) protein (223aa)
Polar amino acid ABC transporter, inner membrane subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8TU99_ALIDB
polar amino acid ABC transporter inner membrane subunit
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ADV00504.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2408_7
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6721..7503
DNA (783bp) protein (261aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU98_ALIDB
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADV00503.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2408_8
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7509..8111
DNA (603bp) protein (201aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU97_ALIDB
HutD family protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00502.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2408_9
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8158..9450
DNA (1293bp) protein (431aa)
imidazolonepropionase (EC:3.5.2.7)
Imidazolonepropionase {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112}; EC=3.5.2.7 {ECO:0000256|HAMAP-Rule:MF_00372, ECO:0000256|SAAS:SAAS00083112};; Imidazolone-5-propionate hydrolase {ECO:0000256|HAMAP-Rule:MF_00372}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Imidazolonepropionase n=2 Tax=Alicycliphilus denitrificans RepID=E8TU96_ALIDB
SCN18_25_8_15_R2_B_scaffold_2408_10
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9455..10891
DNA (1437bp) protein (479aa)
Formiminoglutamate deiminase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU95_ALIDB
formiminoglutamate deiminase
Formiminoglutamate deiminase {ECO:0000313|EMBL:ADV00500.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_2408_11
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10920..11741
DNA (822bp) protein (274aa)
N-formylglutamate amidohydrolase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G4P6_ALIDK
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:AEB84091.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_2408_12
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11738..12601)
DNA (864bp) protein (288aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Glutamate racemase n=2 Tax=Alicycliphilus denitrificans RepID=E8TU93_ALIDB
SCN18_25_8_15_R2_B_scaffold_2408_13
SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12641..13072)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TU92_ALIDB
hypothetical protein
SAM-dependent methyltransferase {ECO:0000313|EMBL:GAO21657.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Displaying 13 items

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