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SCN18_25_1_16_R5_B_scaffold_3

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Displaying items 1-30 of 807 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R5_B_scaffold_3_1
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

265..771
DNA (507bp) protein (169aa)
hypothetical protein id=7719654 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage {ECO:0000313|EMBL:EPR75241.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_2
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

768..1298
DNA (531bp) protein (177aa)
septum formation initiator family protein n=1 Tax=Humibacter albus RepID=UPI0003B3709F
hypothetical protein
Contig_135, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01754.1}; TaxID=1589899 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Frigoribacterium.;" source="Frigoribacterium sp. MEB024.;"
SCN18_25_1_16_R5_B_scaffold_3_3
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1295..2536
DNA (1242bp) protein (414aa)
serine protease id=7719652 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Serine protease {ECO:0000313|EMBL:EPR75239.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
serine peptidase
SCN18_25_1_16_R5_B_scaffold_3_4
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2549..3871
DNA (1323bp) protein (441aa)
NADH dehydrogenase (EC:1.6.99.3)
NADH dehydrogenase, type 2 n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJC5_9ACTN
NADH dehydrogenase, type 2 {ECO:0000313|EMBL:EAR24498.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
SCN18_25_1_16_R5_B_scaffold_3_trna_1
unknown

Not on your lists

3909..3982
DNA (74bp)
transferRNA Leu
SCN18_25_1_16_R5_B_scaffold_3_5
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4034..5473)
DNA (1440bp) protein (480aa)
hypothetical protein id=14628969 bin=bin8_Chloro species=Ilumatobacter coccineus genus=Ilumatobacter taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
RSp0476; RHS-related transmembrane protein
Tax=RBG_13_Chloroflexi_68_17_curated
SCN18_25_1_16_R5_B_scaffold_3_6
SCNPILOT_SOLID_1_TRIM150_Microbacterium_69_53, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(5635..7158)
DNA (1524bp) protein (508aa)
sulfate permease n=1 Tax=Leucobacter salsicius RepID=UPI000348DEBE
Sulfate permease {ECO:0000313|EMBL:EYT56792.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
sulfate permease
SCN18_25_1_16_R5_B_scaffold_3_7
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7402..8052
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Microbacteriaceae RepID=UPI000377F115
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERK73433.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
TetR family transcriptional regulator
SCN18_25_1_16_R5_B_scaffold_3_8
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8049..9326
DNA (1278bp) protein (426aa)
MFS transporter n=1 Tax=Glaciibacter superstes RepID=UPI0003B6A046
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERK73434.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_9
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9334..10566
DNA (1233bp) protein (411aa)
hypothetical protein id=7719626 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Uncharacterized protein {ECO:0000313|EMBL:EAR24506.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_10
SCNpilot_P_inoc_Microbacterium_67_17, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

10557..11909
DNA (1353bp) protein (451aa)
FAD-linked oxidoreductase n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RXH5_LEIAQ
FAD-linked oxidoreductase {ECO:0000313|EMBL:ERK73436.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
FAD-linked oxidoreductase
SCN18_25_1_16_R5_B_scaffold_3_11
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11906..13318
DNA (1413bp) protein (471aa)
bglA; beta-glucosidase (EC:3.2.1.21); K05350 beta-glucosidase [EC:3.2.1.21] id=7719624 bin=CNBR_ACT species=unknown genus=Arthrobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
bglA; beta-glucosidase (EC:3.2.1.21)
Glycoside hydrolase {ECO:0000313|EMBL:KJC65695.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
SCN18_25_1_16_R5_B_scaffold_3_12
SCNPILOT_SOLID2_TRIM150_Afipia_61_20, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13407..14723
DNA (1317bp) protein (439aa)
hypothetical protein n=1 Tax=Nocardiopsis gilva RepID=UPI00034C6145
OsmC family protein
OsmC family protein {ECO:0000313|EMBL:ACU75848.1}; TaxID=479433 species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
SCN18_25_1_16_R5_B_scaffold_3_13
Leifsonia rubra, Leifsonia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14720..15175
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Leifsonia rubra CMS 76R RepID=S7XKL5_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EPR76538.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
SCN18_25_1_16_R5_B_scaffold_3_14
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15172..15906)
DNA (735bp) protein (245aa)
antibiotic ABC transporter permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B6AF95
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
ABC-2 type transporter family protein
SCN18_25_1_16_R5_B_scaffold_3_15
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(15903..16655)
DNA (753bp) protein (251aa)
multidrug ABC transporter ATPase n=1 Tax=Glaciibacter superstes RepID=UPI0003B76B30
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERK70803.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
ABC transporter
SCN18_25_1_16_R5_B_scaffold_3_16
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16664..17314)
DNA (651bp) protein (217aa)
TetR family transcriptional regulator n=1 Tax=Agromyces subbeticus RepID=UPI0003B5BA61
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERK70804.1}; Flags: Fragment;; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
TetR family transcriptional regulator
SCN18_25_1_16_R5_B_scaffold_3_17
CN-SCN_Microbacterium_27x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(17392..18882)
DNA (1491bp) protein (497aa)
HNH endonuclease n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E3P5_9MICO
HNH endonuclease {ECO:0000313|EMBL:KIC57999.1}; TaxID=162426 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium hominis.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_18
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19099..19668
DNA (570bp) protein (190aa)
hypothetical protein; K03744 LemA protein id=7719623 bin=CNBR_ACT species=unknown genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
LemA protein {ECO:0000313|EMBL:EPR75234.1}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
LemA-like protein
SCN18_25_1_16_R5_B_scaffold_3_19
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19686..20591
DNA (906bp) protein (302aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
protease n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000288DA78
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_20
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20588..21889)
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJD8_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EAR24511.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_21
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21981..23072
DNA (1092bp) protein (364aa)
Integral membrane protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJE3_9ACTN
Integral membrane protein {ECO:0000313|EMBL:EAR24516.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_22
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23065..24297
DNA (1233bp) protein (411aa)
Putative amino acid dehydratase n=1 Tax=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM 20744 / JCM 9667 / LMG 2889 / C-1) RepID=B0RH37_CLAMS
threonine dehydratase
Putative amino acid dehydratase {ECO:0000313|EMBL:CAQ02513.1}; TaxID=31964 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / DSM; 20744 / JCM 9667 / LMG 2889 / C-1) (Corynebacterium sepedonicum).;"
SCN18_25_1_16_R5_B_scaffold_3_23
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24350..24835)
DNA (486bp) protein (162aa)
transcription elongation factor GreA n=1 Tax=Arthrobacter sp. M2012083 RepID=UPI000307F443
GreA/GreB family elongation factor
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1534409 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. MWB30.;"
SCN18_25_1_16_R5_B_scaffold_3_24
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24932..25351)
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B443D3
Uncharacterized protein {ECO:0000313|EMBL:KJC65688.1}; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_25
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25408..26283
DNA (876bp) protein (292aa)
Mycothiol S-conjugate amidase {ECO:0000256|HAMAP-Rule:MF_01482}; EC=3.5.1.115 {ECO:0000256|HAMAP-Rule:MF_01482};; TaxID=110935 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Agreia.;" source="Agreia bicolorata.;"
GlcNAc-PI de-N-acetylase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B33BF7
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_26
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26280..26528
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Leifsonia aquatica ATCC 14665 RepID=U2RPL1_LEIAQ
Uncharacterized protein {ECO:0000313|EMBL:ERK70786.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_27
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

26998..29643
DNA (2646bp) protein (882aa)
hypothetical protein n=1 Tax=Sporichthya polymorpha RepID=UPI000362B971
Transmembrane transport protein MmpL3 {ECO:0000313|EMBL:CEL13362.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium sp. MJ126-NF4.;"
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_3_28
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29640..30374)
DNA (735bp) protein (245aa)
Hemolysin III family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AJE8_9ACTN
Hemolysin III family protein {ECO:0000313|EMBL:EAR24521.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
hemolysin III family protein
SCN18_25_1_16_R5_B_scaffold_3_29
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30447..31232
DNA (786bp) protein (262aa)
uppS; undecaprenyl pyrophosphate synthetase; K12503 short-chain Z-isoprenyl diphosphate synthase [EC:2.5.1.68] id=7719607 bin=CNBR_ACT species=Leifsonia xyli genus=Leifsonia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
undecaprenyl pyrophosphate synthetase
Displaying items 1-30 of 807 in total

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