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SCN18_25_1_16_R5_B_scaffold_10

Search features with annotation key words

Displaying items 1-30 of 518 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R5_B_scaffold_10_1
unknown

Not on your lists

3..92
DNA (90bp) protein (30aa)

This feature has no annotations

SCN18_25_1_16_R5_B_scaffold_10_2
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(89..2230)
DNA (2142bp) protein (714aa)
Copper-translocating P-type ATPase id=7720694 bin=CNBR_ACT species=Microbacterium laevaniformans genus=Microbacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
ATPase
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCN18_25_1_16_R5_B_scaffold_10_3
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2488..3267
DNA (780bp) protein (260aa)
ABC branched-chain amino acid family transporter, ATPase subunit n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TKI8_9MICO
ABC branched-chain amino acid family transporter, ATPase subunit {ECO:0000313|EMBL:EAP98893.1}; TaxID=313589 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Janibacter.;" source="Janibacter sp. HTCC2649.;"
amino acid ABC transporter ATP-binding protein
SCN18_25_1_16_R5_B_scaffold_10_4
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3260..3952
DNA (693bp) protein (231aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family n=1 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6SFV8_INTC7
amino acid ABC transporter ATP-binding protein
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:ADU48887.1}; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
SCN18_25_1_16_R5_B_scaffold_10_5
SCNPILOT_EXPT_1000_BF_Devosia_62_26, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4063..5307
DNA (1245bp) protein (415aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6SFV7_INTC7
amino acid ABC transporter substrate-binding protein
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ADU48886.1}; Flags: Precursor;; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
SCN18_25_1_16_R5_B_scaffold_10_6
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5390..5632
DNA (243bp) protein (81aa)
Amino acid/amide ABC transporter membrane protein 1, HAAT family n=1 Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6SFV6_INTC7
amino acid ABC transporter
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:ADU48885.1}; Flags: Precursor;; TaxID=710696 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 /; NBRC 12989 / 7 KIP).;"
SCN18_25_1_16_R5_B_scaffold_10_7
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5639..6259
DNA (621bp) protein (207aa)
Putative branched-chain amino acid transport permease n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TKJ1_9MICO
ABC transporter permease {ECO:0000313|EMBL:KGN34510.1}; TaxID=1385518 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia flava TL1.;"
amino acid ABC transporter
SCN18_25_1_16_R5_B_scaffold_10_8
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6256..7329
DNA (1074bp) protein (358aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UUQ7_9ACTO
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KGN33264.1}; TaxID=1385520 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia sinensis KCTC 19936.;"
amino acid ABC transporter
SCN18_25_1_16_R5_B_scaffold_10_9
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7478..7765
DNA (288bp) protein (96aa)
Putative addiction module antidote protein, CopG/Arc/MetJ family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XG24_NAKMY
Addiction module antidote protein {ECO:0000313|EMBL:EWT05389.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
CopG/Arc/MetJ family addiction module antidote protein
SCN18_25_1_16_R5_B_scaffold_10_10
unknown

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comp(7900..8106)
DNA (207bp) protein (69aa)

This feature has no annotations

SCN18_25_1_16_R5_B_scaffold_10_trna_7
unknown

Not on your lists

comp(8213..8283)
DNA (71bp)
transferRNA Gly
SCN18_25_1_16_R5_B_scaffold_10_11
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8500..9993
DNA (1494bp) protein (498aa)
Amino acid permease-associated region n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4ALJ0_9ACTN
Amino acid permease-associated region {ECO:0000313|EMBL:EAR23781.1}; TaxID=312284 species="Bacteria; Actinobacteria.;" source="marine actinobacterium PHSC20C1.;"
amino acid permease
SCN18_25_1_16_R5_B_scaffold_10_12
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

10063..10644
DNA (582bp) protein (194aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
deoxycytidine triphosphate deaminase n=1 Tax=Microbacterium sp. 292MF RepID=UPI0003827DE8
SCN18_25_1_16_R5_B_scaffold_10_13
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(10646..11515)
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Salinibacterium sp. PAMC 21357 RepID=UPI000287F957
Uncharacterized protein {ECO:0000313|EMBL:AKH81190.1}; TaxID=444103 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. CNQ-509.;"
alpha/beta superfamily hydrolase/acyltransferase
SCN18_25_1_16_R5_B_scaffold_10_14
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11590..12231
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002E8304D
Bacterial regulatory protein, tetR family {ECO:0000313|EMBL:KJL22146.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
TetR family transcriptional regulator
SCN18_25_1_16_R5_B_scaffold_10_15
SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, SCNPILOT_CONT_1000_P_Pseudonocardia_72_23, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12305..13090
DNA (786bp) protein (262aa)
deacetylase (EC:3.5.1.-)
polysaccharide deacetylase n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B71A82
Bifunctional xylanase/deacetylase {ECO:0000313|EMBL:KJL33964.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
SCN18_25_1_16_R5_B_scaffold_10_16
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13095..13616)
DNA (522bp) protein (174aa)
Isopentenyl-diphosphate Delta-isomerase {ECO:0000256|HAMAP-Rule:MF_00202, ECO:0000256|SAAS:SAAS00231155}; Short=IPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202};; EC=5.3.3.2 {ECO:0000256|HAMAP-Rule:MF_00202};; IPP:DMAPP isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; Isopentenyl pyrophosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00202}; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Isopentenyl-diphosphate Delta-isomerase id=7720479 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
isopentenyl-diphosphate delta-isomerase
SCN18_25_1_16_R5_B_scaffold_10_17
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13633..14424)
DNA (792bp) protein (264aa)
Putative carboxyvinyl-carboxyphosphonate phosphorylmutase {ECO:0000313|EMBL:EPR77536.1}; EC=2.7.8.23 {ECO:0000313|EMBL:EPR77536.1};; TaxID=1348338 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia rubra CMS 76R.;"
Putative carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Leifsonia rubra CMS 76R RepID=S7W462_9MICO
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_10_18
unknown

Not on your lists

14527..14760
DNA (234bp) protein (78aa)

This feature has no annotations

SCN18_25_1_16_R5_B_scaffold_10_19
SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, SCNPILOT_CONT_1000_BF_Actinobacteria_69_20, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14757..15188
DNA (432bp) protein (144aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1193182 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera australiensis Ben110.;"
toxin PIN n=1 Tax=Ruania albidiflava RepID=UPI0003B5F483
hypothetical protein
SCN18_25_1_16_R5_B_scaffold_10_20
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15192..16655)
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI00036777CA
Uncharacterized protein {ECO:0000313|EMBL:KGA04687.1}; TaxID=1504317 species="Bacteria; Actinobacteria.;" source="actinobacterium acMicro-4.;"
major facilitator superfamily protein
SCN18_25_1_16_R5_B_scaffold_10_21
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16824..18689
DNA (1866bp) protein (622aa)
Chaperone protein DnaK n=1 Tax=Leifsonia xyli subsp. cynodontis DSM 46306 RepID=U3PFY4_LEIXC
molecular chaperone DnaK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1389489 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia xyli subsp. cynodontis DSM 46306.;"
SCN18_25_1_16_R5_B_scaffold_10_22
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18692..19309
DNA (618bp) protein (206aa)
Protein GrpE id=7720496 bin=CNBR_ACT species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=CNBR_ACT organism_group=Actinobacteria
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1504317 species="Bacteria; Actinobacteria.;" source="actinobacterium acMicro-4.;"
GrpE protein HSP-70 cofactor
SCN18_25_1_16_R5_B_scaffold_10_23
CN-SCN_Leifsonia_139x, CN-SCN_Leifsonia_139x, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19312..20289
DNA (978bp) protein (326aa)
molecular chaperone DnaJ n=1 Tax=Leifsonia sp. 109 RepID=UPI000374C7A8
DnaJ region {ECO:0000313|EMBL:ERK71386.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
dnaJ; DnaJ protein
SCN18_25_1_16_R5_B_scaffold_10_24
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20295..20708
DNA (414bp) protein (138aa)
heat-shock protein n=1 Tax=Humibacter albus RepID=UPI0003B79640
Putative heat shock protein HspR {ECO:0000313|EMBL:ERK71385.1}; TaxID=1358026 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leifsonia.;" source="Leifsonia aquatica ATCC 14665.;"
transcriptional regulator
SCN18_25_1_16_R5_B_scaffold_10_25
unknown

Not on your lists

20733..21428
DNA (696bp) protein (232aa)

This feature has no annotations

SCN18_25_1_16_R5_B_scaffold_10_26
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21432..23579
DNA (2148bp) protein (716aa)
protein disaggregation chaperone n=1 Tax=Glaciibacter superstes RepID=UPI0003B3FD3D
clpB; ATPase with chaperone activity, ATP-binding subunit
ATPase with chaperone activity, ATP-binding subunit {ECO:0000313|EMBL:CCE74260.1}; TaxID=1097677 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Clavibacter.;" source="Clavibacter michiganensis subsp. nebraskensis NCPPB 2581.;"
SCN18_25_1_16_R5_B_scaffold_10_27
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(23634..24701)
DNA (1068bp) protein (356aa)
L-threonine aldolase n=1 Tax=Actinoplanes sp. N902-109 RepID=R4LNR0_9ACTO
ltaA; L-threonine aldolase
L-threonine aldolase {ECO:0000313|EMBL:AGL20098.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCN18_25_1_16_R5_B_scaffold_10_28
CN-SCN_Microbacterium_37x, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(24794..25885)
DNA (1092bp) protein (364aa)
sodium ABC transporter permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B6BD9E
Sodium ABC transporter permease {ECO:0000313|EMBL:KGJ72703.1}; TaxID=1001240 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium roopkundense.;"
transport protein
SCN18_25_1_16_R5_B_scaffold_10_29
SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, SCNPILOT_EXPT_750_BF_Actinomycetales_70_150, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25882..26766)
DNA (885bp) protein (295aa)
ABC transporter ATP-binding protein n=1 Tax=Glaciibacter superstes RepID=UPI0003B6ADD1
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFF59122.1}; TaxID=1529318 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Cryobacterium.;" source="Cryobacterium sp. MLB-32.;"
ABC transporter ATP-binding protein
Displaying items 1-30 of 518 in total

View Taxonomy