ggKbase home page

SCN18_14_9_16_R1_B_scaffold_905

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_905_1
unknown

Not on your lists

comp(2..268)
DNA (267bp) protein (89aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_905_2
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(291..872)
DNA (582bp) protein (194aa)
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8V0_SORC5
ECF family RNA polymerase sigma factor
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN99073.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_905_3
unknown

Not on your lists

comp(953..1984)
DNA (1032bp) protein (344aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_905_4
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2479..3432)
DNA (954bp) protein (318aa)
Uncharacterized protein {ECO:0000313|EMBL:EYF04793.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
SCN18_14_9_16_R1_B_scaffold_905_5
SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, SCNpilot_P_inoc_Kapabacteria_57_18, Kapabacteria

Not on your lists

comp(3509..5314)
DNA (1806bp) protein (602aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G2B6_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF08149.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_905_6
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5328..6806)
DNA (1479bp) protein (493aa)
BNR repeat domain protein {ECO:0000313|EMBL:AKF11552.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
Regulator of chromosome condensation, RCC1 id=1870695 bin=GWB2_Proteobacteria_55_19 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
chromosome condensation regulator RCC1
SCN18_14_9_16_R1_B_scaffold_905_7
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

comp(6803..7981)
DNA (1179bp) protein (393aa)
Glucosyltransferase-I n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GN82_SORC5
glucosyltransferase-I
Glucosyltransferase-I {ECO:0000313|EMBL:CAN93546.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_905_8
CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, CN-SCN_Eukaryote_25x, Eukaryote

Not on your lists

comp(7978..9219)
DNA (1242bp) protein (414aa)
Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9U2I9_PHYPA
Predicted protein {ECO:0000313|EMBL:EDQ50103.1}; TaxID=3218 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella.;" source="Physcomitrella patens subsp. patens (Moss).;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_905_9
scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, Eukaryote

Not on your lists

comp(9366..10130)
DNA (765bp) protein (255aa)
Putative membrane protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FCL4_SORC5
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:CAN91675.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_905_10
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10127..10735)
DNA (609bp) protein (203aa)
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FYE7_SORC5
ECF family RNA polymerase sigma factor
ECF-family RNA polymerase sigma factor {ECO:0000313|EMBL:CAN95611.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_905_11
unknown

Not on your lists

comp(10820..11950)
DNA (1131bp) protein (377aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_905_12
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12382..14643)
DNA (2262bp) protein (754aa)
Peptidase S41 n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2SN62_9DELT
Peptidase S41 {ECO:0000313|EMBL:ERK90060.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
peptidase, S41 family protein
SCN18_14_9_16_R1_B_scaffold_905_13
SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, SCNPILOT_EXPT_500_BF_STEP10_Armatimonadetes_55_34, Bacteria

Not on your lists

14739..15647
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U6Z0_MYXSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGC43337.1}; TaxID=1278073 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
SCN18_14_9_16_R1_B_scaffold_905_14
unknown

Not on your lists

15818..16105
DNA (288bp) protein (96aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_905_15
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16067..16819)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YA34_SORCE
Uncharacterized protein {ECO:0000313|EMBL:AKF04019.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_905_16
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17458..18837)
DNA (1380bp) protein (460aa)
UPI0003CE13C6 related cluster n=1 Tax=unknown RepID=UPI0003CE13C6
Uncharacterized protein {ECO:0000313|EMBL:ESW63532.1}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
serine/threonine protein kinase
SCN18_14_9_16_R1_B_scaffold_905_17
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19011..21572
DNA (2562bp) protein (854aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B7014F
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SCN18_14_9_16_R1_B_scaffold_905_18
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21608..21904
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000378EA12
Beta-galactosidase trimerization domain protein
Uncharacterized protein {ECO:0000313|EMBL:EJC84307.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
SCN18_14_9_16_R1_B_scaffold_905_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21846..22163
DNA (318bp) protein (106aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Rhizobium lupini HPC(L) RepID=K5DPM1_RHILU
Oligopeptide transport system permease protein OppB {ECO:0000313|EMBL:KIV66946.1}; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Binding-protein-dependent transport systems inner membrane component
Displaying 19 items

View Taxonomy