ggKbase home page

SCN18_14_9_16_R1_B_scaffold_932

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_932_1
SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, SCNPILOT_EXPT_300_BF_Thiobacillus_62_448, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..870)
DNA (870bp) protein (290aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Histidinol dehydrogenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5W4_SORC5
hisD; hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_2
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1298..1894
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5X4_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF05228.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_3
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1966..2781
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5X6_SORC5
Uracil phosphoribosyltransferase {ECO:0000313|EMBL:EYF05229.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_4
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2837..5584)
DNA (2748bp) protein (916aa)
Peptidase S8 and S53 subtilisin kexin sedolisin n=1 Tax=Oscillochloris trichoides DG-6 RepID=E1IC59_9CHLR
Peptidase S8 and S53 subtilisin kexin sedolisin {ECO:0000313|EMBL:EFO81249.1}; TaxID=765420 species="Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Oscillochloridaceae; Oscillochloris.;" source="Oscillochloris trichoides DG-6.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_5
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5873..6403
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7TZI2_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AKF84695.1}; TaxID=1334629 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_6
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

6478..7572
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YAL7_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41351.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_14_9_16_R1_B_scaffold_932_7
unknown

Not on your lists

7815..8843
DNA (1029bp) protein (343aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_932_8
SCNpilot_BF_INOC_Sphingobacteriales_46_9, SCNpilot_BF_INOC_Sphingobacteriales_46_9, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9239..11095
DNA (1857bp) protein (619aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FF59_CONWI
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
SCN18_14_9_16_R1_B_scaffold_932_9
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11161..11766)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Pseudomonas RepID=F2K6P6_PSEBN
DedA family inner membrane protein YohD {ECO:0000313|EMBL:AKF09950.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
membrane protein
SCN18_14_9_16_R1_B_scaffold_932_10
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11971..13176
DNA (1206bp) protein (402aa)
Signal transduction histidine kinase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B327_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KFA91496.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
histidine kinase
SCN18_14_9_16_R1_B_scaffold_932_11
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13243..14262)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5X9_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF05230.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_12
SCNPILOT_CONT_750_P_Aeromonadales_61_5_9, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14282..14968)
DNA (687bp) protein (229aa)
Hypothetical acetyltransferase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GL58_SORC5
acetyltransferase
Hypothetical acetyltransferase {ECO:0000313|EMBL:CAN90228.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_932_13
unknown

Not on your lists

comp(14982..15905)
DNA (924bp) protein (308aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_932_14
unknown

Not on your lists

16170..16826
DNA (657bp) protein (219aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_932_15
SCNPILOT_CONT_300_BF_Flavobacteriales_39_5_fragment, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16793..18103
DNA (1311bp) protein (437aa)
Major royal jelly protein n=1 Tax=Oscillatoria sp. PCC 6506 RepID=D8G7G8_9CYAN
Major royal jelly protein {ECO:0000313|EMBL:CBN58558.1}; TaxID=272129 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_16
SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, SCNPILOT_SOLID_1_TRIM150_Actinobacteria_71_9, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18502..19449
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TTF8_9DELT
Uncharacterized protein {ECO:0000313|EMBL:ERK88719.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
metallo-beta-lactamase family protein
SCN18_14_9_16_R1_B_scaffold_932_17
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

comp(19458..22163)
DNA (2706bp) protein (902aa)
protein kinase (EC:2.7.11.1)
Protein kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5Y1_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF05231.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
SCN18_14_9_16_R1_B_scaffold_932_18
SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, SCNPILOT_SOLID2_TRIM150_Rhizobiales_63_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22407..23540
DNA (1134bp) protein (378aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G5Y5_SORC5
Type IV fimbrial assembly, ATPase PilB {ECO:0000313|EMBL:AKF11400.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_932_19
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23542..24225
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E37C29
kdpE; response regulator of potassium translocation (two-component system with KdpD)
Fis family transcriptional regulator {ECO:0000313|EMBL:KJR64176.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCN18_14_9_16_R1_B_scaffold_932_20
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24446..25675)
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036DC342
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAO29520.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
SCN18_14_9_16_R1_B_scaffold_932_21
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25738..27897)
DNA (2160bp) protein (720aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030F522C
2-polyprenyl-6-methoxyphenol hydroxylase {ECO:0000313|EMBL:KJC54670.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
alpha/beta hydrolase
SCN18_14_9_16_R1_B_scaffold_932_22
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28011..28628
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036EF001
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:AFU47937.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_14_9_16_R1_B_scaffold_932_23
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28659..28907)
DNA (249bp) protein (83aa)
RNA polymerase sigma subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U641_9RHIZ
RNA polymerase sigma subunit {ECO:0000313|EMBL:ENN88064.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
RNA polymerase sigma70
Displaying 23 items

View Taxonomy