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SCN18_14_9_16_R1_B_scaffold_1000

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_1000_1
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..253)
DNA (252bp) protein (84aa)
rfaE; ADP-heptose synthase (EC:2.7.-.-)
ADP-heptose synthase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IJJ6_BORPD
Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_12_48_26_curated
SCN18_14_9_16_R1_B_scaffold_1000_2
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(256..765)
DNA (510bp) protein (170aa)
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=1255043 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 /; ALEN2).;"
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0DZE8_THIND
gmhB_[H]; D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase
SCN18_14_9_16_R1_B_scaffold_1000_3
SCNPILOT_EXPT_1000_BF_Microbacterium_69_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(780..1895)
DNA (1116bp) protein (372aa)
Phosphoheptose isomerase {ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|SAAS:SAAS00089180};; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
ADP-heptose synthase / D-glycero-beta-D-manno-heptose 7-phosphate kinase n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y6S3_9RHOO
phosphoheptose isomerase
SCN18_14_9_16_R1_B_scaffold_1000_4
SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8, Verrucomicrobia

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comp(1908..3152)
DNA (1245bp) protein (415aa)
ADP-heptose id=4670584 bin=GWF2_Planctomycetes_42_9 species=unknown genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycetes_42_9 organism_group=Planctomycetes
glycosyl transferase family protein
Tax=RIFCSPLOWO2_12_FULL_RIF03_38_15_curated
SCN18_14_9_16_R1_B_scaffold_1000_5
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3405..4253
DNA (849bp) protein (283aa)
SCN18_14_9_16_R1_B_scaffold_1000_6
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4627..6654)
DNA (2028bp) protein (676aa)
SCN18_14_9_16_R1_B_scaffold_1000_7
unknown

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6974..9148
DNA (2175bp) protein (725aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1000_8
unknown

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comp(9158..9760)
DNA (603bp) protein (201aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1000_9
Pleurocapsa minor, Pleurocapsa, Pleurocapsales, Cyanobacteria, Bacteria

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comp(9757..11790)
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9TBD0_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFY79446.1}; TaxID=118163 species="Bacteria; Cyanobacteria; Pleurocapsales; Pleurocapsa.;" source="Pleurocapsa sp. PCC 7327.;"
SCN18_14_9_16_R1_B_scaffold_1000_10
unknown

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comp(11942..12427)
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003791AB4
SCN18_14_9_16_R1_B_scaffold_1000_11
unknown

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12634..12984
DNA (351bp) protein (117aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1000_12
unknown

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comp(12956..14782)
DNA (1827bp) protein (609aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1000_13
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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comp(14779..17988)
DNA (3210bp) protein (1070aa)
Uncharacterized protein n=1 Tax=Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4) RepID=E8V6M1_TERSS
hypothetical protein
Tax=GWA2_RIF03_38_11_curated
SCN18_14_9_16_R1_B_scaffold_1000_14
SCNpilot_BF_INOC_Bacteroidetes_37_82, SCNpilot_BF_INOC_Bacteroidetes_37_82, SCNpilot_BF_INOC_Bacteroidetes_37_82, SCNpilot_BF_INOC_Bacteroidetes_37_82, Bacteroidetes, Bacteria

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18324..18728
DNA (405bp) protein (135aa)
Hypothetical conserved protein n=1 Tax=uncultured delta proteobacterium RepID=H5SJD2_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EYF08959.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
membrane protein
SCN18_14_9_16_R1_B_scaffold_1000_15
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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18890..20281
DNA (1392bp) protein (464aa)
protein kinase (EC:2.7.11.1)
Protein kinase {ECO:0000313|EMBL:CAN95799.1}; EC=2.7.11.1 {ECO:0000313|EMBL:CAN95799.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Protein kinase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G3U5_SORC5
SCN18_14_9_16_R1_B_scaffold_1000_16
GWA1_Bdellovibrionales_52_35_curated, Bdellovibrionaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

20588..20887
DNA (300bp) protein (100aa)
id=2817804 bin=GWA1_Deltaproteobacteria_52_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=GWA1_Bdellovibrionales_52_35_curated
SCN18_14_9_16_R1_B_scaffold_1000_17
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

Not on your lists

comp(20958..22409)
DNA (1452bp) protein (484aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01T11_SOLUE
integral membrane sensor signal transduction histidine kinase
SCN18_14_9_16_R1_B_scaffold_1000_18
CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, CN-SCN_Gemmatimonadetes_22x, Gemmatimonadetes, Bacteria

Not on your lists

comp(22467..23231)
DNA (765bp) protein (255aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JAG9_ANAD2
winged helix family two component transcriptional regulator
Tax=RBG_16_Deltaproteobacteria_71_12_curated
SCN18_14_9_16_R1_B_scaffold_1000_19
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23461..23994
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XPP0_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33800.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_14_9_16_R1_B_scaffold_1000_20
CN-SCN_Phenylobacterium_31x, RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24068..25042
DNA (975bp) protein (325aa)
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002696}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00002685};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EZV7_SORC5
SCN18_14_9_16_R1_B_scaffold_1000_21
SCNPILOT_EXPT_1000_BF_Devosia_65_23, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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25039..25287
DNA (249bp) protein (83aa)
Phosphoribosylformylglycinamidine synthase subunit PurS {ECO:0000256|HAMAP-Rule:MF_01926}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_01926};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_01926};; Formylglycinamide ribonucleotide amidotransferase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; Phosphoribosylformylglycinamidine synthase subunit III {ECO:0000256|HAMAP-Rule:MF_01926}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XUX0_SORCE
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1000_22
unknown

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25430..25621
DNA (192bp) protein (64aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1000_23
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25618..26010
DNA (393bp) protein (131aa)
Death-on-curing family protein n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6ET25_SPHCR
death-on-curing family protein
Death-on-curing family protein {ECO:0000313|EMBL:AEG49488.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCN18_14_9_16_R1_B_scaffold_1000_24
SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26095..27480)
DNA (1386bp) protein (462aa)
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:AKF05849.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
M20 family peptidase id=4982196 bin=GWA2_Elusimicrobia_66_18 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
peptidase M20
SCN18_14_9_16_R1_B_scaffold_1000_25
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

comp(27656..28879)
DNA (1224bp) protein (408aa)
Integral membrane protease n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FIP1_SORC5
integral membrane protease
Integral membrane protease {ECO:0000313|EMBL:CAN91873.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_1000_26
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(28876..29580)
DNA (705bp) protein (235aa)
Flagellar assembly protein FliH n=1 Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8JB67_ANAD2
flagellar assembly protein FliH
Flagellar assembly protein FliH {ECO:0000313|EMBL:ACL65694.1}; TaxID=455488 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258).;"
SCN18_14_9_16_R1_B_scaffold_1000_27
unknown

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comp(29577..29804)
DNA (228bp) protein (76aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1000_28
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29807..30502)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4Y841_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP40410.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
Displaying 28 items

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