ggKbase home page

SCN18_14_9_16_R1_B_scaffold_1288

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R1_B_scaffold_1288_1
unknown

Not on your lists

comp(3..218)
DNA (216bp) protein (72aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1288_2
unknown

Not on your lists

618..1877
DNA (1260bp) protein (420aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1288_3
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2051..2920
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MVV2_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE05619.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
SCN18_14_9_16_R1_B_scaffold_1288_4
SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, Gammaproteobacteria

Not on your lists

3182..4111
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YCB8_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP42006.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_14_9_16_R1_B_scaffold_1288_5
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4207..5424)
DNA (1218bp) protein (406aa)
Major facilitator superfamily MFS_1 n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UKV3_ANASK
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACG72809.1}; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K).;"
SCN18_14_9_16_R1_B_scaffold_1288_6
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5488..6408
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UKV2_ANASK
HTH-type transcriptional activator AaeR {ECO:0000313|EMBL:GAO01195.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
LysR family transcriptional regulator
SCN18_14_9_16_R1_B_scaffold_1288_7
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6490..7845)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3S926_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EHQ64274.1}; TaxID=1131935 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus dendritiformis C454.;"
pyridoxal-dependent decarboxylase domain protein
SCN18_14_9_16_R1_B_scaffold_1288_8
SCNPILOT_SOLID2_TRIM150_Rhodanobacter_68_363, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8279..8731
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4VIH1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL87012.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1288_9
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8780..10243)
DNA (1464bp) protein (488aa)
IS66 family transposase Orf3 n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U240_MYXSD
Mobile element protein {ECO:0000313|EMBL:KFE66825.1}; TaxID=394096 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
IS66 family transposase Orf3
SCN18_14_9_16_R1_B_scaffold_1288_10
SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10254..10652)
DNA (399bp) protein (133aa)
Transposase orf1, IS66 family n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1D4X8_MYXXD
Marine sediment metagenome DNA, contig: S03H2_S09387 {ECO:0000313|EMBL:GAH70985.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
IS66 family transposase Orf1
SCN18_14_9_16_R1_B_scaffold_1288_11
unknown

Not on your lists

comp(10646..10975)
DNA (330bp) protein (110aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1288_12
scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, scnpilot_dereplicated_Eukaryote_unknown_8, Eukaryote

Not on your lists

11513..11869
DNA (357bp) protein (119aa)
Tax=RIFOXYC2_FULL_PER-ii_58_32_curated
SCN18_14_9_16_R1_B_scaffold_1288_13
CN-SCN_Comamonas_56x, CN-SCN_Comamonas_56x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11915..12400
DNA (486bp) protein (162aa)
alanine acetyltransferase n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002FC666C
Alanine acetyltransferase {ECO:0000313|EMBL:KGI77859.1}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
glutathione-dependent formaldehyde-activating protein
SCN18_14_9_16_R1_B_scaffold_1288_14
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12663..13376
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000372A40E
Methyltransferase-like protein 20 {ECO:0000313|EMBL:GAO03242.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1288_15
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13531..15342
DNA (1812bp) protein (604aa)
M1 family peptidase n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MN62_CORCM
ape2; M1 family peptidase
M1 family peptidase {ECO:0000313|EMBL:AFE08057.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
SCN18_14_9_16_R1_B_scaffold_1288_16
unknown

Not on your lists

comp(16493..16855)
DNA (363bp) protein (121aa)

This feature has no annotations

SCN18_14_9_16_R1_B_scaffold_1288_17
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16953..17258
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EU49_SORC5
Uncharacterized protein {ECO:0000313|EMBL:EYF05960.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
hypothetical protein
SCN18_14_9_16_R1_B_scaffold_1288_18
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

17255..18022
DNA (768bp) protein (256aa)
Nucleotide-binding enzyme n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EU46_SORC5
nucleotide-binding enzyme
Nucleotide-binding enzyme {ECO:0000313|EMBL:CAN91066.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCN18_14_9_16_R1_B_scaffold_1288_19
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18118..19254)
DNA (1137bp) protein (379aa)
cfr; ribosomal RNA large subunit methyltransferase Cfr (EC:2.1.1.-)
hypothetical protein n=1 Tax=Promicromonospora sukumoe RepID=UPI0003645090
Ribosomal RNA large subunit methyltransferase N {ECO:0000313|EMBL:AKF05402.1}; TaxID=927083 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
SCN18_14_9_16_R1_B_scaffold_1288_20
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19791..20279
DNA (489bp) protein (163aa)
SCN18_14_9_16_R1_B_scaffold_1288_21
unknown

Not on your lists

comp(20374..20673)
DNA (300bp) protein (100aa)

This feature has no annotations

Displaying 21 items

View Taxonomy