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SCN18_14_9_16_R4_B_scaffold_2017

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_2017_1
unknown

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comp(2..253)
DNA (252bp) protein (84aa)

This feature has no annotations

SCN18_14_9_16_R4_B_scaffold_2017_2
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(333..2582)
DNA (2250bp) protein (750aa)
TonB-dependent receptor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7P2_NOVAD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ABD26131.1}; Flags: Precursor;; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_14_9_16_R4_B_scaffold_2017_3
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2545..3060)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEJ1_SPHWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ70707.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_2017_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3057..3503)
DNA (447bp) protein (149aa)
Cytochrome c, class I n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEJ0_SPHWW
class I cytochrome c
Cytochrome c, class I {ECO:0000313|EMBL:ABQ70706.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_2017_5
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3505..4056)
DNA (552bp) protein (184aa)
amine dehydrogenase (EC:1.4.98.1)
Amine dehydrogenase {ECO:0000313|EMBL:ABQ70705.1}; EC=1.4.9.1 {ECO:0000313|EMBL:ABQ70705.1};; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Amine dehydrogenase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEI9_SPHWW
SCN18_14_9_16_R4_B_scaffold_2017_6
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4073..4663)
DNA (591bp) protein (197aa)
Methylamine dehydrogenase accessory protein MauD n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEI8_SPHWW
methylamine dehydrogenase accessory protein MauD
Methylamine dehydrogenase accessory protein MauD {ECO:0000313|EMBL:ABQ70704.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_2017_7
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4660..5172)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T7F3_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ69691.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_14_9_16_R4_B_scaffold_2017_8
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5172..6350)
DNA (1179bp) protein (393aa)
Methylamine dehydrogenase heavy subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEI7_SPHWW
methylamine dehydrogenase heavy subunit
Methylamine dehydrogenase heavy subunit {ECO:0000313|EMBL:ABQ70703.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_2017_9
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6663..7355
DNA (693bp) protein (231aa)
Transcriptional regulator, TetR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEI6_SPHWW
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABQ70702.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_2017_10
scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, Eukaryote

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7557..8474
DNA (918bp) protein (306aa)
Flavin containing amine oxidoreductase family protein n=1 Tax=Rhodococcus sp. JVH1 RepID=J1R5Y6_9NOCA
Putative oxidoreductase {ECO:0000313|EMBL:GAF48207.1}; TaxID=1219028 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus wratislaviensis NBRC 100605.;"
oxidoreductase
SCN18_14_9_16_R4_B_scaffold_2017_11
scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, scnpilot_dereplicated_Eukaryote_Rotifera_1, Eukaryote

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8490..8972
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2B6D7_9PSED
Uncharacterized protein {ECO:0000313|EMBL:KEA55814.1}; TaxID=95486 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cenocepacia.;"
oxidoreductase
Displaying 11 items

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