ggKbase home page

SCN18_14_9_16_R4_B_scaffold_1237

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1237_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..381
DNA (381bp) protein (127aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VB38_SPHWW
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABQ69504.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_1237_2
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(200..1222)
DNA (1023bp) protein (341aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M7X3_METRJ
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ACB25276.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCN18_14_9_16_R4_B_scaffold_1237_3
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1470..3161
DNA (1692bp) protein (564aa)
Putative transmembrane adenylate cyclase n=1 Tax=Vibrio shilonii AK1 RepID=A6D228_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:KDP76776.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1237_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3209..5518)
DNA (2310bp) protein (770aa)
ligand-gated channel protein n=1 Tax=Sphingomonas wittichii RepID=UPI000306DAA7
Uncharacterized protein {ECO:0000313|EMBL:GAO53475.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCN18_14_9_16_R4_B_scaffold_1237_5
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5853..8693
DNA (2841bp) protein (947aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0003642882
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ67282.1}; Flags: Precursor;; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_1237_6
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8716..10062
DNA (1347bp) protein (449aa)
Amidohydrolase family protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QPA4_BREDI
Amidohydrolase family protein {ECO:0000313|EMBL:EKY29545.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
amidohydrolase family protein
SCN18_14_9_16_R4_B_scaffold_1237_trna_1
unknown

Not on your lists

10366..10444
DNA (79bp)
transferRNA Ala
SCN18_14_9_16_R4_B_scaffold_1237_7
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10601..11587
DNA (987bp) protein (329aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI000374FA26
Zinc-binding dehydrogenase family protein {ECO:0000313|EMBL:EZP55367.1}; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. RIT328.;"
NADP-dependent oxidoreductase
SCN18_14_9_16_R4_B_scaffold_1237_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11594..12490)
DNA (897bp) protein (299aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003780EF8
BroH {ECO:0000313|EMBL:AFA53636.1}; Flags: Fragment;; TaxID=1107309 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. OB-3.;"
alpha/beta hydrolase
SCN18_14_9_16_R4_B_scaffold_1237_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12556..12813)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00037535C0
DNA, contig: SP613 {ECO:0000313|EMBL:GAN12842.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
2Fe-2S ferredoxin
SCN18_14_9_16_R4_B_scaffold_1237_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13147..13917)
DNA (771bp) protein (257aa)
putative 4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B30114
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:KEY98290.1}; TaxID=322611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. BHC-A.;"
Displaying 11 items

View Taxonomy