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SCN18_14_9_16_R4_B_scaffold_1863

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_1863_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..906
DNA (906bp) protein (302aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
UPI0003D05B9D related cluster n=1 Tax=unknown RepID=UPI0003D05B9D
Putative acetyl-CoA acetyltransferase {ECO:0000313|EMBL:GAO39125.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
SCN18_14_9_16_R4_B_scaffold_1863_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(947..1804)
DNA (858bp) protein (286aa)
Conserved hypothetical integral membrane protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V3C4_SPHWW
Membrane protein {ECO:0000313|EMBL:KHA64020.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1863_trna_1
unknown

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1754..1827
DNA (74bp)
transferRNA Arg
SCN18_14_9_16_R4_B_scaffold_1863_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1930..2832
DNA (903bp) protein (301aa)
hypothetical protein id=12557079 bin=CNBR_ACIDO species=Hyphomicrobium sp. genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:CDP52971.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_1863_4
SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, SCNPILOT_CONT_750_BF_Acidobacteria_60_9_7, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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2854..4095
DNA (1242bp) protein (414aa)
glucose sorbosone dehydrogenase n=1 Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5DF1D
Glucose/sorbosone dehydrogenase {ECO:0000313|EMBL:ENZ83370.1}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
glucose sorbosone dehydrogenase
SCN18_14_9_16_R4_B_scaffold_1863_5
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4141..4554
DNA (414bp) protein (138aa)
Cytochrome c class I n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U537_DEIML
class I cytochrome c
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
SCN18_14_9_16_R4_B_scaffold_1863_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4597..4890)
DNA (294bp) protein (98aa)
plasmid stabilization protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C81D
Uncharacterized protein {ECO:0000313|EMBL:GAD49762.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
plasmid stabilization protein
SCN18_14_9_16_R4_B_scaffold_1863_7
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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comp(4887..5153)
DNA (267bp) protein (89aa)
addiction module antitoxin n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C81E
addiction module antitoxin
Tax=RIFCSPLOWO2_12_FULL_Sphingomonadales_63_15_curated
SCN18_14_9_16_R4_B_scaffold_1863_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5336..7021
DNA (1686bp) protein (562aa)
Thiamine pyrophosphate enzyme TPP binding domain protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEC4_SPHWW
hypothetical protein
Thiamine pyrophosphate enzyme TPP binding domain protein {ECO:0000313|EMBL:ABQ70640.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_1863_9
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7234..8598)
DNA (1365bp) protein (455aa)
Arabinose efflux permease family protein n=1 Tax=Caulobacter sp. AP07 RepID=J2GZD1_9CAUL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC23114.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCN18_14_9_16_R4_B_scaffold_1863_10
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8804..9286)
DNA (483bp) protein (161aa)
Transcriptional regulator, MarR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VED1_SPHWW
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ABQ70647.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
SCN18_14_9_16_R4_B_scaffold_1863_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9327..9587)
DNA (261bp) protein (87aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FB47_DESAA
fumarylacetoacetate (FAA) hydrolase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying 12 items

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