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SCN18_14_9_16_R4_B_scaffold_759

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_759_1
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(61..1575)
DNA (1515bp) protein (505aa)
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2W4N6_9BRAD
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EJN13617.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
AMP-binding protein
SCN18_14_9_16_R4_B_scaffold_759_2
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1691..2446
DNA (756bp) protein (252aa)
HpcH/HpaI aldolase n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TKE8_ACIAC
5-keto-4-deoxy-D-glucarate aldolase
5-keto-4-deoxy-D-glucarate aldolase {ECO:0000313|EMBL:CDN51252.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
SCN18_14_9_16_R4_B_scaffold_759_3
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2472..3332)
DNA (861bp) protein (287aa)
Taurine catabolism dioxygenase TauD/TfdA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRS8_PARL1
Taurine dioxygenase {ECO:0000313|EMBL:GAN55778.1}; TaxID=1231623 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Tanticharoenia.;" source="Tanticharoenia sakaeratensis NBRC 103193.;"
taurine catabolism dioxygenase TauD/TfdA
SCN18_14_9_16_R4_B_scaffold_759_4
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3632..4213
DNA (582bp) protein (194aa)
DSBA oxidoreductase n=1 Tax=Sphingomonas melonis RepID=UPI0003709E9B
Sphingomonas taxi strain 30a NODE_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26855.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
DSBA oxidoreductase
SCN18_14_9_16_R4_B_scaffold_759_5
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

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comp(4417..5682)
DNA (1266bp) protein (422aa)
HipA-like n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IC73_9SPHN
HipA-like protein {ECO:0000313|EMBL:KEZ14565.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
HipA-like protein
SCN18_14_9_16_R4_B_scaffold_759_6
SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, SCNPILOT_CONT_1000_P_Gammaproteobacteria_novel_39_13, Gammaproteobacteria

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comp(5679..5915)
DNA (237bp) protein (79aa)
XRE family transcriptional regulator n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SNE2_9SPHN
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:AGH51997.1}; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
SCN18_14_9_16_R4_B_scaffold_759_7
SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, SCNPILOT_EXPT_750_BF_Plasmid_64_137, Plasmid-like

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6732..8009
DNA (1278bp) protein (426aa)
Amidohydrolase, imidazolonepropionase n=1 Tax=Sphingobium sp. AP49 RepID=J2CZG9_9SPHN
Amidohydrolase {ECO:0000313|EMBL:GAO53688.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
amidohydrolase
SCN18_14_9_16_R4_B_scaffold_759_8
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8137..10194
DNA (2058bp) protein (686aa)
acyl-peptide hydrolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B756C1
Acyl-peptide hydrolase {ECO:0000313|EMBL:AHE52774.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
peptidase S9 prolyl oligopeptidase
SCN18_14_9_16_R4_B_scaffold_759_9
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10247..10567)
DNA (321bp) protein (107aa)
membrane protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037C5F46
Membrane protein {ECO:0000313|EMBL:EQB19772.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
Putative membrane protein
SCN18_14_9_16_R4_B_scaffold_759_10
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10747..11289
DNA (543bp) protein (181aa)
shikimate kinase n=1 Tax=Rhizobium leguminosarum RepID=UPI00035CC2D8
Chloramphenicol phosphotransferase-like protein {ECO:0000313|EMBL:CEJ15875.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_14_9_16_R4_B_scaffold_759_11
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11367..13559
DNA (2193bp) protein (731aa)
Putative TonB-dependent receptor n=2 Tax=Novosphingobium nitrogenifigens RepID=F1ZB34_9SPHN
Putative TonB-dependent receptor {ECO:0000313|EMBL:EGD58099.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
TonB-dependent siderophore receptor
SCN18_14_9_16_R4_B_scaffold_759_12
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13556..13852
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI00035CA7CF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52333.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCN18_14_9_16_R4_B_scaffold_759_13
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13849..15318
DNA (1470bp) protein (490aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003729748
hypothetical protein
PepSY-associated TM helix domain protein {ECO:0000313|EMBL:ACI52332.1}; Putative membrane protein {ECO:0000313|EMBL:CAP57654.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCN18_14_9_16_R4_B_scaffold_759_14
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15315..15596
DNA (282bp) protein (94aa)
SCN18_14_9_16_R4_B_scaffold_759_15
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15684..18074
DNA (2391bp) protein (797aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EMB8_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:GAO53596.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
TonB-dependent receptor
SCN18_14_9_16_R4_B_scaffold_759_16
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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18089..19348
DNA (1260bp) protein (420aa)
Metallophosphoesterase n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFX4_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:GAO53595.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
metallophosphoesterase
SCN18_14_9_16_R4_B_scaffold_759_17
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19420..19866
DNA (447bp) protein (149aa)
Transcriptional regulator, TetR family n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VFX2_SPHWW
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABQ71188.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
Displaying 17 items

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