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SCN18_14_9_16_R4_B_scaffold_2571_10

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: 6442..7005

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMI5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 69.9
  • Coverage: 186.0
  • Bit_score: 258
  • Evalue 4.80e-66
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 69.9
  • Coverage: 186.0
  • Bit_score: 258
  • Evalue 1.40e-66
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAK67774.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.9
  • Coverage: 186.0
  • Bit_score: 258
  • Evalue 6.80e-66

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Taxonomy

SCNpilot_P_inoc_Plasmid_64_5.7 → SCNpilot_P_inoc_Plasmid_64_5.7 → SCNpilot_P_inoc_Plasmid_64_5.7 → SCNpilot_P_inoc_Plasmid_64_5.7 → SCNpilot_P_inoc_Plasmid_64_5.7 → Plasmid-like

Sequences

DNA sequence
Length: 564
GTGAGCATCGACCTCGCCGCGTGTTCGGACGGCGAACTGGCCGCGCTGGCAATCGGCGGGCGGCAGGCGGCTTATGGTGAGCTGATGCGGCGCCACCGCGACGGCATCTTCCGCCTGTTGCGCGGGCATAGCGGCGATGCCGACGCCGCGCTCGATCTGACCCAGCAGGCATTTATCGCCGCCTTTGCCGCGCTGCGCAGCTATGACGGGGCGCGGCCGTTCCGGCTGTGGATCGCGCGGATCGCGATCAACAAGGCGCATGACTGGAATCGCCGGCGCAAGGTGCGCCGGATGTTCACCTTCGCGCGCCCGATCGACGAGGCGTCCGGGATCGCCGATCCCGGCATTCCCGCCGACGTGCAGCTCGACGATCGCCGCGCGCTGGAGCGAACGATGCGCGCGATCGCGCAATTGCCGGTCAATCTGCGCGACGTGCTGGTGCTGCGCACGATCGAGGGAATGAGCCAGGCGGAAAGCGCGGGCGTGCTCGGCGTCAGCGAAAAGGCAGTCGAGACGCGGCTCTATCGTGCGCGGTCGAAACTTATGGAAATGTTGAGGGATTGA
PROTEIN sequence
Length: 188
VSIDLAACSDGELAALAIGGRQAAYGELMRRHRDGIFRLLRGHSGDADAALDLTQQAFIAAFAALRSYDGARPFRLWIARIAINKAHDWNRRRKVRRMFTFARPIDEASGIADPGIPADVQLDDRRALERTMRAIAQLPVNLRDVLVLRTIEGMSQAESAGVLGVSEKAVETRLYRARSKLMEMLRD*