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SCN18_14_9_16_R4_B_scaffold_2571

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R4_B_scaffold_2571_1
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..724)
DNA (723bp) protein (241aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
DNA polymerase III subunit beta n=1 Tax=Sphingomonas sp. S17 RepID=F3WYT5_9SPHN
DNA polymerase III subunit beta
SCN18_14_9_16_R4_B_scaffold_2571_2
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(940..1557)
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI0003603A3F
Sphingomonas taxi strain 30a NODE_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIU26196.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
membrane protein
SCN18_14_9_16_R4_B_scaffold_2571_3
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1769..2410
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00036F3988
Phosphoglycerate mutase {ECO:0000313|EMBL:KHA63220.1}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. Ant20.;"
phosphoglycerate mutase
SCN18_14_9_16_R4_B_scaffold_2571_4
SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2407..2880
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI00028A2E04
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP73234.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_14_9_16_R4_B_scaffold_2571_5
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3123..4307
DNA (1185bp) protein (395aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
50S rRNA methyltransferase n=1 Tax=Sphingomonas elodea RepID=UPI00026308E2
RNA methyltransferase RlmN
SCN18_14_9_16_R4_B_scaffold_2571_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4309..5211)
DNA (903bp) protein (301aa)
copper resistance protein CopD n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003B4CEEA
Copper resistance protein CopD {ECO:0000313|EMBL:EXS70511.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. Ant17.;"
copper resistance protein CopD
SCN18_14_9_16_R4_B_scaffold_2571_7
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5212..5595)
DNA (384bp) protein (128aa)
Copper resistance protein CopC n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YY88_SPHJU
copC; copper resistance protein CopC
Copper resistance protein C {ECO:0000313|EMBL:EQB04108.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
SCN18_14_9_16_R4_B_scaffold_2571_8
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5748..6008
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000380D0B2
SCN18_14_9_16_R4_B_scaffold_2571_9
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6005..6445
DNA (441bp) protein (147aa)
Uncharacterized protein n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YY90_SPHJU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI95322.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCN18_14_9_16_R4_B_scaffold_2571_10
SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, Plasmid-like

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6442..7005
DNA (564bp) protein (188aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IMI5_9SPHN
RNA polymerase ECF-type sigma factor
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:BAK67774.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 10 items

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