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SCN18_25_1_16_R3_B_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 1081 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R3_B_scaffold_0_1
SCNPILOT_EXPT_750_BF_Rhodanobacter_67_8_fragment, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..168
DNA (168bp) protein (56aa)
elongation factor Tu, partial n=2 Tax=Rudaea cellulosilytica RepID=UPI0003721995
translation elongation factor TU
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCN18_25_1_16_R3_B_scaffold_0_2
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


610..921
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BCA6A
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpsJ; 30S ribosomal protein S10
SCN18_25_1_16_R3_B_scaffold_0_3
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


932..1573
DNA (642bp) protein (214aa)
50S ribosomal protein L3 n=1 Tax=Rudaea cellulosilytica RepID=UPI000367B546
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
LSU ribosomal protein L3P
SCN18_25_1_16_R3_B_scaffold_0_4
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1585..2181
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035F6E19
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
rplD; 50S ribosomal protein L4
SCN18_25_1_16_R3_B_scaffold_0_5
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2178..2483
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000372773C
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000313|EMBL:KHM98383.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
SCN18_25_1_16_R3_B_scaffold_0_6
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2525..3352
DNA (828bp) protein (276aa)
50S ribosomal protein L2 n=1 Tax=Rudaea cellulosilytica RepID=UPI000360E4AE
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
50S ribosomal protein L2
SCN18_25_1_16_R3_B_scaffold_0_7
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3373..3657
DNA (285bp) protein (95aa)
30S ribosomal protein S19 n=1 Tax=Rudaea cellulosilytica RepID=UPI00036E0658
Ribosomal protein S19, bacterial-type {ECO:0000313|EMBL:EQD50622.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
30S ribosomal protein S19
SCN18_25_1_16_R3_B_scaffold_0_8
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3667..4002
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Rudaea cellulosilytica RepID=UPI000369AAFD
LSU ribosomal protein L22P
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
SCN18_25_1_16_R3_B_scaffold_0_9
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4012..4776
DNA (765bp) protein (255aa)
30S ribosomal protein S3 n=1 Tax=Rudaea cellulosilytica RepID=UPI000366C5E2
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
rpsC; 30S ribosomal protein S3
SCN18_25_1_16_R3_B_scaffold_0_10
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4793..5206
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Rudaea cellulosilytica RepID=UPI00038062A9
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1543381 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Oleiagrimonas.;" source="Oleiagrimonas soli.;"
50S ribosomal protein L16
SCN18_25_1_16_R3_B_scaffold_0_11
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5206..5400
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000381F043
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1397528 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. PBN3.;"
rpmC; 50S ribosomal protein L29
SCN18_25_1_16_R3_B_scaffold_0_12
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5411..5686
DNA (276bp) protein (92aa)
30S ribosomal protein S17 n=1 Tax=Rudaea cellulosilytica RepID=UPI00035F86CD
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
rpsQ; 30S ribosomal protein S17
SCN18_25_1_16_R3_B_scaffold_0_13
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5711..6079
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Rudaea cellulosilytica RepID=UPI000379B6BB
Ribosomal protein L14, bacterial-type {ECO:0000313|EMBL:EQD67230.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
50S ribosomal protein L14
SCN18_25_1_16_R3_B_scaffold_0_14
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6116..6427
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Rudaea cellulosilytica RepID=UPI000372184D
Ribosomal protein L24 {ECO:0000313|EMBL:EQD69805.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ribosomal protein L24, bacterial/organelle
SCN18_25_1_16_R3_B_scaffold_0_15
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6440..6979
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037FC0D9
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
rplE; 50S ribosomal protein L5
SCN18_25_1_16_R3_B_scaffold_0_16
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6999..7304
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Rudaea cellulosilytica RepID=UPI000375539F
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
30S ribosomal protein S14
SCN18_25_1_16_R3_B_scaffold_0_17
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7422..7820
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Rudaea cellulosilytica RepID=UPI00035D026F
30S ribosomal protein S8
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
SCN18_25_1_16_R3_B_scaffold_0_18
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7834..8361
DNA (528bp) protein (176aa)
50S ribosomal protein L6 n=1 Tax=Rudaea cellulosilytica RepID=UPI00035CF68E
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rplF; 50S ribosomal protein L6
SCN18_25_1_16_R3_B_scaffold_0_19
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8393..8752
DNA (360bp) protein (120aa)
50S ribosomal protein L18 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037878BD
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCN18_25_1_16_R3_B_scaffold_0_20
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8839..9354
DNA (516bp) protein (172aa)
30S ribosomal protein S5 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037C498F
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
30S ribosomal protein S5
SCN18_25_1_16_R3_B_scaffold_0_21
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9341..9547
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000368655D
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
50S ribosomal protein L30
SCN18_25_1_16_R3_B_scaffold_0_22
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9650..10084
DNA (435bp) protein (145aa)
50S ribosomal protein L15 n=1 Tax=Rudaea cellulosilytica RepID=UPI000364F998
50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
SCN18_25_1_16_R3_B_scaffold_0_23
Rhodanobacter denitrificans_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_69_165, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10095..11441
DNA (1347bp) protein (449aa)
preprotein translocase subunit SecY n=1 Tax=Rudaea cellulosilytica RepID=UPI00037584C5
secY; preprotein translocase subunit SecY
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
SCN18_25_1_16_R3_B_scaffold_0_24
SCNPILOT_CONT_500_P_Xanthomonadales_69_150, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11631..11990
DNA (360bp) protein (120aa)
30S ribosomal protein S13 n=1 Tax=Rudaea cellulosilytica RepID=UPI0003759CFF
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
30S ribosomal protein S13
SCN18_25_1_16_R3_B_scaffold_0_25
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12008..12400
DNA (393bp) protein (131aa)
30S ribosomal protein S11 n=1 Tax=Rudaea cellulosilytica RepID=UPI000376842D
rpsK; 30S ribosomal protein S11
Tax=BJP_08E140C01_Xanthomonadales_64_42
SCN18_25_1_16_R3_B_scaffold_0_26
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12487..13119
DNA (633bp) protein (211aa)
30S ribosomal protein S4 n=1 Tax=Rudaea cellulosilytica RepID=UPI000382A6C7
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=767434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Frateuria.;" source="Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB; 13370) (Acetobacter aurantius).;"
SCN18_25_1_16_R3_B_scaffold_0_27
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13236..14234
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Rudaea cellulosilytica RepID=UPI0003710C20
SCN18_25_1_16_R3_B_scaffold_0_28
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14433..14819
DNA (387bp) protein (129aa)
50S ribosomal protein L17 n=1 Tax=Rudaea cellulosilytica RepID=UPI00037BC057
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
50S ribosomal protein L17
SCN18_25_1_16_R3_B_scaffold_0_29
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14938..15450
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036870A5
dsbB; disulfide bond formation protein B
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
SCN18_25_1_16_R3_B_scaffold_0_30
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15569..16987
DNA (1419bp) protein (473aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase {ECO:0000313|EMBL:ABB11689.1}; EC=2.5.1.54 {ECO:0000313|EMBL:ABB11689.1};; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Rudaea cellulosilytica RepID=UPI0003747B55
Displaying items 1-30 of 1081 in total

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