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SCN18_25_1_16_R3_B_scaffold_85

Search features with annotation key words

Displaying items 1-30 of 143 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_1_16_R3_B_scaffold_85_1
SCNpilot_BF_INOC_Flavobacterium_39_30, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

1..3006
DNA (3006bp) protein (1002aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036A3212
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF59585.1}; TaxID=402612 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511).;"
SCN18_25_1_16_R3_B_scaffold_85_2
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3243..3872
DNA (630bp) protein (210aa)
transcriptional repressor, LexA family (EC:3.4.21.88)
LexA repressor {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992}; EC=3.4.21.88 {ECO:0000256|HAMAP-Rule:MF_00015, ECO:0000256|RuleBase:RU003992};; TaxID=396595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
umuDC operon protein-like protein n=1 Tax=Thioalkalivibrio sp. ALJ24 RepID=UPI000368923C
SCN18_25_1_16_R3_B_scaffold_85_3
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3882..4532
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036C236F
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR83430.1}; TaxID=381754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain PA7).;"
SCN18_25_1_16_R3_B_scaffold_85_4
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4541..5983
DNA (1443bp) protein (481aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00035C5D7C
Uncharacterized protein {ECO:0000313|EMBL:KFN50365.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
DNA repair nucleotidyltransferase
SCN18_25_1_16_R3_B_scaffold_85_5
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5996..9118
DNA (3123bp) protein (1041aa)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
dnaE2; DNA polymerase (EC:2.7.7.7)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003661C76
SCN18_25_1_16_R3_B_scaffold_85_6
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9229..11964)
DNA (2736bp) protein (912aa)
serine/threonine protein kinase (EC:2.7.11.1)
Serine/threonine protein kinase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C2S9_HYPNA
Serine/threonine protein kinase {ECO:0000313|EMBL:KCZ97119.1}; TaxID=1280954 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas polymorpha PS728.;"
SCN18_25_1_16_R3_B_scaffold_85_7
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12203..15778
DNA (3576bp) protein (1192aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI0003732CA5
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
SCN18_25_1_16_R3_B_scaffold_85_8
SCNpilot_P_inoc_Xanthomonadales_63_13, SCNpilot_P_inoc_Xanthomonadales_63_13, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16222..17361)
DNA (1140bp) protein (380aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000371D292
Peptidase M19 {ECO:0000313|EMBL:EYR66447.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
peptidase M19, renal dipeptidase
SCN18_25_1_16_R3_B_scaffold_85_9
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17581..18318
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=Amycolatopsis alba RepID=UPI000362060B
Marine sediment metagenome DNA, contig: S03H2_S17594 {ECO:0000313|EMBL:GAH74120.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
tetracycline repressor protein
SCN18_25_1_16_R3_B_scaffold_85_10
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19163..19453)
DNA (291bp) protein (97aa)
Putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain n=1 Tax=Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2) RepID=L0E231_THIND
Marine sediment metagenome DNA, contig: S03H2_S04021 {ECO:0000313|EMBL:GAH49304.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
SCN18_25_1_16_R3_B_scaffold_85_11
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20135..20362
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0STV8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KGM57482.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
hypothetical protein
SCN18_25_1_16_R3_B_scaffold_85_12
SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, SCNPILOT_SOLID2_TRIM150_Burkholderiales_66_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20623..21060)
DNA (438bp) protein (146aa)
Putative DNA-binding protein n=1 Tax=Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081) RepID=A1JJA1_YERE8
hypothetical protein
Putative DNA-binding protein {ECO:0000313|EMBL:CAL10691.1}; TaxID=393305 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 /; 8081).;"
SCN18_25_1_16_R3_B_scaffold_85_13
unknown

Not on your lists

21283..22002
DNA (720bp) protein (240aa)

This feature has no annotations

SCN18_25_1_16_R3_B_scaffold_85_14
CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, CN-SCN_Eukaryote_66x, Eukaryote

Not on your lists

22361..22768
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa S54485 RepID=U9P7V2_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:AIO25070.1}; TaxID=983594 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia ATCC 25416.;"
hypothetical protein
SCN18_25_1_16_R3_B_scaffold_85_15
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

22804..24666
DNA (1863bp) protein (621aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0ER06_CUPNN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI76524.1}; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
SCN18_25_1_16_R3_B_scaffold_85_16
SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, SCNPILOT_CONT_300_BF_Nitrosospira_plasmid_56_185, Plasmid-like

Not on your lists

24920..25312
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JL41_AERHY
Uncharacterized protein {ECO:0000313|EMBL:EKB27263.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
putative vacuolar-type H+ATPase subunit A
SCN18_25_1_16_R3_B_scaffold_85_17
unknown

Not on your lists

25494..25757
DNA (264bp) protein (88aa)

This feature has no annotations

SCN18_25_1_16_R3_B_scaffold_85_18
Castellaniella defragrans_SCNPILOT_SOLID2_TRIM150_Castellaniella_66_80, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26156..26641
DNA (486bp) protein (162aa)
DNA repair protein RadC n=1 Tax=Spongiibacter tropicus RepID=UPI0003B5B60C
DNA repair protein RadC
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
SCN18_25_1_16_R3_B_scaffold_85_19
CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, CN-SCN_Plasmids_251x, Mobile_element

Not on your lists

26754..27674
DNA (921bp) protein (307aa)
Putative RepA replicase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J4U1_POLGS
RepA replicase
Putative RepA replicase protein {ECO:0000313|EMBL:ADZ69033.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCN18_25_1_16_R3_B_scaffold_85_20
CN-SCN_Acidovorax_22x, CN-SCN_Acidovorax_22x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28106..28873
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000344DB43
Cobyrinic acid a,c-diamide synthase domain protein {ECO:0000313|EMBL:EQD71951.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
chromosome partitioning ATPase
SCN18_25_1_16_R3_B_scaffold_85_21
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

28870..29898
DNA (1029bp) protein (343aa)
ParB-like partition protein n=2 Tax=mine drainage metagenome RepID=T1CRN1_9ZZZZ
ParB-like partition protein {ECO:0000313|EMBL:EQD71950.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
ParB-like partition protein
SCN18_25_1_16_R3_B_scaffold_85_22
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29895..30395
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Xanthomonas fuscans subsp. fuscans RepID=U4M401_9XANT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGK66628.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
SCN18_25_1_16_R3_B_scaffold_85_23
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30392..30922
DNA (531bp) protein (177aa)
Conjugal transfer protein TraF n=1 Tax=Geobacter sp. (strain M21) RepID=C6DZ96_GEOSM
conjugal transfer protein TraF
Conjugal transfer protein TraF {ECO:0000313|EMBL:ACT18404.1}; TaxID=443144 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. (strain M21).;"
SCN18_25_1_16_R3_B_scaffold_85_24
SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, SCNPILOT_EXPT_1000_BF_Rhodanobacter_Plasmid_63_42, Plasmid-like

Not on your lists

30924..31376
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Xanthomonas campestris RepID=UPI00031651BD
Transglycosylase SLT domain protein {ECO:0000313|EMBL:CEH50377.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
putative lytic transglycosylase
SCN18_25_1_16_R3_B_scaffold_85_25
SCN_Rubrivivax_15x, SCN_Rubrivivax_15x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31625..33721
DNA (2097bp) protein (699aa)
Uncharacterized protein n=2 Tax=Xanthomonas RepID=U4M8Y5_9XANT
Uncharacterized protein {ECO:0000313|EMBL:CEH60040.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
hypothetical protein
SCN18_25_1_16_R3_B_scaffold_85_26
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33724..35754
DNA (2031bp) protein (677aa)
Type IV secretory pathway, VirD4 component (Fragment) n=1 Tax=Xanthomonas perforans 91-118 RepID=F0BYL7_9XANT
Conjugal transfer protein TraG {ECO:0000313|EMBL:KHD60555.1}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. phaseoli.;"
putative conjugal transfer TraG protein, type IV secretion system
SCN18_25_1_16_R3_B_scaffold_85_27
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35751..36215
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Xanthomonas campestris RepID=UPI00031AFD1B
Genome assembly B1459, plasmid I {ECO:0000313|EMBL:CEO96442.1}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
hypothetical protein
SCN18_25_1_16_R3_B_scaffold_85_28
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36208..37218
DNA (1011bp) protein (337aa)
Flp pilus assembly protein, ATPase CpaF n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BHR1_9XANT
Flp pilus assembly protein, ATPase CpaF {ECO:0000313|EMBL:EGD07990.1}; TaxID=925775 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria ATCC 35937.;"
P-type conjugative transfer ATPase TrbB
SCN18_25_1_16_R3_B_scaffold_85_29
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37281..37757)
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI00036755E8
Marine sediment metagenome DNA, contig: S03H2_L00128 {ECO:0000313|EMBL:GAH28044.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
XRE family transcriptional regulator
SCN18_25_1_16_R3_B_scaffold_85_30
CN-SCN_Arenimonas_307x, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37774..38151)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI000382CB3C
Marine sediment metagenome DNA, contig: S03H2_L00128 {ECO:0000313|EMBL:GAH28039.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
histone-like protein
Displaying items 1-30 of 143 in total

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