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SCN18_30_10_14_R1_B_scaffold_2149

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2149_1
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..2030)
DNA (2028bp) protein (676aa)
Polysaccharide deacetylase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J696_9SPHN
Polysaccharide deacetylase {ECO:0000313|EMBL:EQB33501.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
polysaccharide deacetylase
SCN18_30_10_14_R1_B_scaffold_2149_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2367..3149)
DNA (783bp) protein (261aa)
Type 4 prepilin-like proteins leader peptide-processing enzyme {ECO:0000256|RuleBase:RU003794}; EC=2.1.1.- {ECO:0000256|RuleBase:RU003794};; EC=3.4.23.43 {ECO:0000256|RuleBase:RU003794};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRJ5_9SPHN
gspO; leader peptidase/N-methyltransferase
SCN18_30_10_14_R1_B_scaffold_2149_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3174..3896)
DNA (723bp) protein (241aa)
Putative general secretion pathway protein N n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRJ4_9SPHN
gspN; putative general secretion pathway protein N
Putative general secretion pathway protein N {ECO:0000313|EMBL:BAK66060.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3893..4372)
DNA (480bp) protein (160aa)
General secretion pathway protein M n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRJ3_9SPHN
gspM; general secretion pathway protein M
General secretion pathway protein M {ECO:0000313|EMBL:BAK66059.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4372..5487)
DNA (1116bp) protein (372aa)
Putative general secretion pathway protein L n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRJ2_9SPHN
gspL; putative general secretion pathway protein L
Putative general secretion pathway protein L {ECO:0000313|EMBL:BAK66058.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5484..6479)
DNA (996bp) protein (332aa)
Type II secretion system protein K n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRJ1_9SPHN
gspK; general secretion pathway protein K
Type II secretion system protein K {ECO:0000256|PIRNR:PIRNR002786}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6511..7194)
DNA (684bp) protein (228aa)
General secretion pathway protein J n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRJ0_9SPHN
gspJ; general secretion pathway protein J
General secretion pathway protein J {ECO:0000313|EMBL:BAK66056.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7191..7640)
DNA (450bp) protein (150aa)
General secretion pathway protein H n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI9_9SPHN
gspH; general secretion pathway protein H
General secretion pathway protein H {ECO:0000313|EMBL:BAK66055.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7637..7984)
DNA (348bp) protein (116aa)
General secretion pathway protein I n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI8_9SPHN
gspI; general secretion pathway protein I
General secretion pathway protein I {ECO:0000313|EMBL:BAK66054.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8133..8642)
DNA (510bp) protein (170aa)
General secretion pathway protein G n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI7_9SPHN
gspG; general secretion pathway protein G
General secretion pathway protein G {ECO:0000313|EMBL:BAK66053.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8645..9886)
DNA (1242bp) protein (414aa)
General secretion pathway protein F n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI6_9SPHN
gspF; general secretion pathway protein F
General secretion pathway protein F {ECO:0000313|EMBL:BAK66052.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9879..11471)
DNA (1593bp) protein (531aa)
General secretion pathway protein E n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI5_9SPHN
gspE; general secretion pathway protein E
General secretion pathway protein E {ECO:0000313|EMBL:BAK66051.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11468..13651)
DNA (2184bp) protein (728aa)
General secretion pathway protein D n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI4_9SPHN
gspD; general secretion pathway protein D
General secretion pathway protein D {ECO:0000313|EMBL:BAK66050.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2149_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13648..14322)
DNA (675bp) protein (225aa)
Putative general secretion pathway protein C n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRI3_9SPHN
gspC; putative general secretion pathway protein C
Putative general secretion pathway protein C {ECO:0000313|EMBL:BAK66049.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 14 items

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