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SCN18_30_10_14_R1_B_scaffold_2160

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2160_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..824
DNA (822bp) protein (274aa)
Outer membrane receptor protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G2E0_9SPHN
Outer membrane receptor protein {ECO:0000313|EMBL:EJL23790.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
TonB-dependent receptor
SCN18_30_10_14_R1_B_scaffold_2160_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1247..2164
DNA (918bp) protein (306aa)
LysR family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQH8_9SPHN
LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:BAK68352.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2730..5018
DNA (2289bp) protein (763aa)
Putative S8 family peptidase {ECO:0000313|EMBL:BAK68357.1}; EC=3.4.-.- {ECO:0000313|EMBL:BAK68357.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative S8 family peptidase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQI3_9SPHN
putative S8 family peptidase
SCN18_30_10_14_R1_B_scaffold_2160_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5333..5695)
DNA (363bp) protein (121aa)
Iron-sulfur cluster assembly protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRX9_9SPHN
iron-sulfur cluster assembly protein
Iron-sulfur cluster assembly protein {ECO:0000313|EMBL:BAK68534.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5708..6196)
DNA (489bp) protein (163aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY0_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68535.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6193..7461)
DNA (1269bp) protein (423aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Cysteine desulfurase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY1_9SPHN
putative selenocysteine lyase
SCN18_30_10_14_R1_B_scaffold_2160_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7458..8213)
DNA (756bp) protein (252aa)
Iron-sulfur cluster assembly protein SufD n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY2_9SPHN
sufD; iron-sulfur cluster assembly protein SufD
Iron-sulfur cluster assembly protein SufD {ECO:0000313|EMBL:BAK68537.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_8
Sphingopyxis sp. MC1_SCNPILOT_EXPT_500_BF_STEP10_Sphingopyxis_65_8, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8210..8551)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UR72_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO96540.1}; TaxID=39960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter litoralis.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2160_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8548..9312)
DNA (765bp) protein (255aa)
Iron-sulfur cluster assembly protein SufC n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY4_9SPHN
sufC; iron-sulfur cluster assembly protein SufC
Iron-sulfur cluster assembly protein SufC {ECO:0000313|EMBL:BAK68539.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_10
unknown

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comp(9313..9753)
DNA (441bp) protein (147aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2160_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9833..11308)
DNA (1476bp) protein (492aa)
Iron-sulfur cluster assembly protein SufB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY6_9SPHN
sufB; iron-sulfur cluster assembly protein SufB
Iron-sulfur cluster assembly protein SufB {ECO:0000313|EMBL:BAK68541.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11305..11787)
DNA (483bp) protein (161aa)
Rrf2 family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY7_9SPHN
Rrf2 family transcriptional regulator
Rrf2 family transcriptional regulator {ECO:0000313|EMBL:BAK68542.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11993..12871)
DNA (879bp) protein (293aa)
Putative AraC family transcriptional regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRY9_9SPHN
putative AraC family transcriptional regulator
Putative AraC family transcriptional regulator {ECO:0000313|EMBL:BAK68544.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2160_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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13256..14230
DNA (975bp) protein (325aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00054567}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Dihydroorotate dehydrogenase (quinone) n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IRZ0_9SPHN
pyrD; dihydroorotate dehydrogenase
Displaying 14 items

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