ggKbase home page

SCN18_30_10_14_R1_B_scaffold_2167

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2167_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

403..1182
DNA (780bp) protein (260aa)
Chromosome partitioning protein ParA n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS23_9SPHN
parA; chromosome partitioning protein ParA
Chromosome partitioning protein ParA {ECO:0000313|EMBL:BAK68578.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1179..2093
DNA (915bp) protein (305aa)
Chromosome partitioning protein ParB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS22_9SPHN
parB; chromosome partitioning protein ParB
Chromosome partitioning protein ParB {ECO:0000313|EMBL:BAK68577.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2244..3080)
DNA (837bp) protein (279aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS19_9SPHN
kdsA; 2-dehydro-3-deoxyphosphooctonate aldolase
SCN18_30_10_14_R1_B_scaffold_2167_4
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3099..4118)
DNA (1020bp) protein (340aa)
KpsF/GutQ family protein (EC:5.3.1.13)
KpsF/GutQ n=1 Tax=Sphingomonas wittichii RepID=UPI0002ED6752
D-arabinose 5-phosphate {ECO:0000313|EMBL:KKC27812.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
SCN18_30_10_14_R1_B_scaffold_2167_5
SCNpilot_P_inoc_Rhodobacter_64_50, SCNpilot_P_inoc_Rhodobacter_64_50, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4161..4859)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3ZBJ3_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KKC27811.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2167_6
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4930..6672)
DNA (1743bp) protein (581aa)
Uncharacterized protein n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5VEV0_SPHWW
Uncharacterized protein {ECO:0000313|EMBL:KKC27810.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_2167_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6795..7796
DNA (1002bp) protein (334aa)
Threonine aldolase {ECO:0000313|EMBL:BAK68573.1}; EC=4.1.2.5 {ECO:0000313|EMBL:BAK68573.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Threonine aldolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS18_9SPHN
ltaA; threonine aldolase
SCN18_30_10_14_R1_B_scaffold_2167_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7793..8707
DNA (915bp) protein (305aa)
Conserved hypothetical membrane protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS17_9SPHN
hypothetical protein
Conserved hypothetical membrane protein {ECO:0000313|EMBL:BAK68572.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8636..9475)
DNA (840bp) protein (280aa)
Putative NAD-dependent epimerase/dehydratase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS16_9SPHN
putative NAD-dependent epimerase/dehydratase
Putative NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:BAK68571.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9611..12208
DNA (2598bp) protein (866aa)
Aminopeptidase N {ECO:0000313|EMBL:BAK68570.1}; EC=3.4.11.2 {ECO:0000313|EMBL:BAK68570.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Aminopeptidase N n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS15_9SPHN
pepN; aminopeptidase
SCN18_30_10_14_R1_B_scaffold_2167_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12263..12877)
DNA (615bp) protein (205aa)
ABC transporter auxiliary protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS14_9SPHN
ABC transporter auxiliary protein
ABC transporter auxiliary protein {ECO:0000313|EMBL:BAK68569.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12892..13854)
DNA (963bp) protein (321aa)
ABC transporter periplasmic protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS13_9SPHN
ABC transporter periplasmic protein
ABC transporter periplasmic protein {ECO:0000313|EMBL:BAK68568.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14050..14682)
DNA (633bp) protein (211aa)
ABC transporter ATP-binding protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS12_9SPHN
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:BAK68567.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14679..15839)
DNA (1161bp) protein (387aa)
ABC transporter permease protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS11_9SPHN
ABC transporter permease
ABC transporter permease protein {ECO:0000313|EMBL:BAK68566.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2167_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15877..16293
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS10_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68565.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 15 items

View Taxonomy