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SCN18_30_10_14_R1_B_scaffold_2671

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2671_1
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..536
DNA (534bp) protein (178aa)
Lysozyme {ECO:0000256|RuleBase:RU003788}; EC=3.2.1.17 {ECO:0000256|RuleBase:RU003788};; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
Lysozyme (Fragment) n=1 Tax=Sphingomonas sp. LH128 RepID=J8VR23_9SPHN
glycoside hydrolase
SCN18_30_10_14_R1_B_scaffold_2671_2
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(787..2136)
DNA (1350bp) protein (450aa)
Aldehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ITK5_9SPHN
aldehyde dehydrogenase
Aldehyde dehydrogenase {ECO:0000256|PIRNR:PIRNR036492}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2359..3786
DNA (1428bp) protein (476aa)
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:BAK65877.1}; EC=1.2.1.- {ECO:0000313|EMBL:BAK65877.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
NAD-dependent aldehyde dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQK5_9SPHN
NAD-dependent aldehyde dehydrogenase
SCN18_30_10_14_R1_B_scaffold_2671_4
SCNPILOT_CONT_500_P_Xanthomonadales_66_42, SCNPILOT_CONT_500_P_Xanthomonadales_66_42, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4014..4646
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00031C0DE8
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCN18_30_10_14_R1_B_scaffold_2671_5
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4648..5703
DNA (1056bp) protein (352aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002F48649
Transcriptional regulator {ECO:0000313|EMBL:GAN76277.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
adenylate cyclase 3
SCN18_30_10_14_R1_B_scaffold_2671_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5697..9887)
DNA (4191bp) protein (1397aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQK3_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65875.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9887..11314)
DNA (1428bp) protein (476aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ46_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65874.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12005..12490)
DNA (486bp) protein (162aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ45_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65873.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12601..12855)
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ44_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65872.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13084..13245
DNA (162bp) protein (54aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ43_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65871.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13412..14176)
DNA (765bp) protein (255aa)
Methyltransferase family protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D9T8_9SPHN
Methyltransferase family protein {ECO:0000313|EMBL:EJK86604.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. AP49.;"
type 11 methyltransferase
SCN18_30_10_14_R1_B_scaffold_2671_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14209..16011)
DNA (1803bp) protein (601aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ42_9SPHN
sdhA; succinate dehydrogenase flavoprotein subunit
SCN18_30_10_14_R1_B_scaffold_2671_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16011..16400)
DNA (390bp) protein (130aa)
Succinate dehydrogenase hydrophobic membrane anchor subunit {ECO:0000313|EMBL:BAK65869.1}; EC=1.3.99.1 {ECO:0000313|EMBL:BAK65869.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Succinate dehydrogenase hydrophobic membrane anchor subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ41_9SPHN
sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit
SCN18_30_10_14_R1_B_scaffold_2671_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16400..16834)
DNA (435bp) protein (145aa)
Succinate dehydrogenase cytochrome b-556 subunit {ECO:0000313|EMBL:BAK65868.1}; EC=1.3.99.1 {ECO:0000313|EMBL:BAK65868.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Succinate dehydrogenase cytochrome b-556 subunit n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ40_9SPHN
sdhC; succinate dehydrogenase cytochrome b-556 subunit
SCN18_30_10_14_R1_B_scaffold_2671_15
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16997..17548)
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM27_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65282.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_16
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17755..19101
DNA (1347bp) protein (449aa)
Twitching motility protein PilJ n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ39_9SPHN
twitching motility protein PilJ
Twitching motility protein PilJ {ECO:0000313|EMBL:BAK65867.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2671_17
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19182..19835
DNA (654bp) protein (218aa)
Ribosomal protein L11 methyltransferase {ECO:0000313|EMBL:BAK65866.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK65866.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQ38_9SPHN
prmA; 50S ribosomal protein L11 methyltransferase
Displaying 17 items

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