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SCN18_30_10_14_R1_B_scaffold_2854

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2854_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(241..1095)
DNA (855bp) protein (285aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS25_9SPHN
mnmG; tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2854_2
unknown

Not on your lists

1499..1897
DNA (399bp) protein (133aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2854_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2109..3419)
DNA (1311bp) protein (437aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA modification GTPase MnmE n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS26_9SPHN
mnmE; tRNA modification GTPase MnmE
SCN18_30_10_14_R1_B_scaffold_2854_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3444..3701)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS27_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68582.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2854_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3814..4536)
DNA (723bp) protein (241aa)
UPI0003D03B62 related cluster n=1 Tax=unknown RepID=UPI0003D03B62
Membrane protein {ECO:0000313|EMBL:ESZ85690.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
integral membrane protein TerC
SCN18_30_10_14_R1_B_scaffold_2854_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4570..5826)
DNA (1257bp) protein (419aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
UPI0003D598A2 related cluster n=1 Tax=unknown RepID=UPI0003D598A2
Baf family transcriptional activator
SCN18_30_10_14_R1_B_scaffold_2854_7
Nitrosospira multiformis_SCNPILOT_SOLID_1_TRIM150_Nitrosospira_54_27, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6144..7793
DNA (1650bp) protein (550aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00037B6F40
Animal heme peroxidase
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_30_10_14_R1_B_scaffold_2854_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7810..8268)
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS32_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK68587.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2854_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8388..9341)
DNA (954bp) protein (318aa)
Uroporphyrinogen decarboxylase {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554}; Short=UPD {ECO:0000256|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000256|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000256|HAMAP-Rule:MF_00218, ECO:0000256|RuleBase:RU000554};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Uroporphyrinogen decarboxylase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IS33_9SPHN
hemE; uroporphyrinogen decarboxylase
SCN18_30_10_14_R1_B_scaffold_2854_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9702..10562
DNA (861bp) protein (287aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative pyruvate, phosphate dikinase regulatory protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ6_9SPHN
putative phosphotransferase
SCN18_30_10_14_R1_B_scaffold_2854_11
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10559..11161
DNA (603bp) protein (201aa)
Maf-like protein SLG_00020 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ7_9SPHN
putative Maf-like protein
Maf-like protein SLG_00020 {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2854_12
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11172..11687
DNA (516bp) protein (172aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Shikimate dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ8_9SPHN
aroE; shikimate 5-dehydrogenase
SCN18_30_10_14_R1_B_scaffold_2854_13
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11641..11952
DNA (312bp) protein (104aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Shikimate dehydrogenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ8_9SPHN
aroE; shikimate 5-dehydrogenase
SCN18_30_10_14_R1_B_scaffold_2854_14
CN-SCN_Erythrobacter_14x, CN-SCN_Erythrobacter_14x, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11949..12056
DNA (108bp) protein (36aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Dephospho-CoA kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIJ9_9SPHN
coaE; dephospho-CoA kinase
Displaying 14 items

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