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SCN18_30_10_14_R1_B_scaffold_2888

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_2888_1
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..901
DNA (900bp) protein (300aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0KJJ5_9SPHN
histidine kinase
SCN18_30_10_14_R1_B_scaffold_2888_trna_1
unknown

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comp(989..1060)
DNA (72bp)
transferRNA Thr
SCN18_30_10_14_R1_B_scaffold_2888_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1265..2419
DNA (1155bp) protein (385aa)
aminotransferase n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000288668A
Uncharacterized protein {ECO:0000313|EMBL:EIM67137.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
putative aminotransferase
SCN18_30_10_14_R1_B_scaffold_2888_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2444..3142)
DNA (699bp) protein (233aa)
glutamine amidotransferase (EC:6.3.5.2)
Glutamine amidotransferase class-I n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G414_NOVAD
Glutamine amidotransferase class-I {ECO:0000313|EMBL:ABD27409.1}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium aromaticivorans (strain DSM 12444 / F199).;"
SCN18_30_10_14_R1_B_scaffold_2888_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3158..3325)
DNA (168bp) protein (56aa)
SCN18_30_10_14_R1_B_scaffold_2888_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3544..4410)
DNA (867bp) protein (289aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHR2_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66835.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_2888_6
unknown

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comp(4417..4683)
DNA (267bp) protein (89aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2888_7
SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, SCNPILOT_EXPT_750_BF_Xanthomonadales_66_150, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5199..6728
DNA (1530bp) protein (510aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5MZZ3_CLOK5
Uncharacterized protein {ECO:0000313|EMBL:EDK34439.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
collagen like triple helix protein
SCN18_30_10_14_R1_B_scaffold_2888_8
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6876..8423
DNA (1548bp) protein (516aa)
Glycosyl transferase family 2 n=1 Tax=Paenibacillus polymyxa CR1 RepID=V5X0L7_PAEPO
glycosyl transferase family 2
Glycosyl transferase family 2 {ECO:0000313|EMBL:AHC21487.1}; TaxID=1429244 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus polymyxa CR1.;"
SCN18_30_10_14_R1_B_scaffold_2888_9
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8420..9529
DNA (1110bp) protein (370aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WSJ6_9CLOT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EJF39371.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
family 2 glycosyl transferase
SCN18_30_10_14_R1_B_scaffold_2888_10
unknown

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9554..9724
DNA (171bp) protein (57aa)

This feature has no annotations

SCN18_30_10_14_R1_B_scaffold_2888_11
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9851..10267)
DNA (417bp) protein (139aa)
ATPase {ECO:0000313|EMBL:BAK66818.1}; EC=3.6.-.- {ECO:0000313|EMBL:BAK66818.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
ATPase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IHP5_9SPHN
ATPase
Displaying 12 items

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