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SCN18_30_10_14_R1_B_scaffold_4429

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_4429_1
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..298)
DNA (297bp) protein (99aa)
GTPase HflX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV8_9SPHN
hflX; putative GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4429_2
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(408..896)
DNA (489bp) protein (163aa)
Protein Hfq n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISV9_9SPHN
hfq; protein Hfq
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4429_3
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1055..2422)
DNA (1368bp) protein (456aa)
Nitrogen assimilation regulatory protein NtrX n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW0_9SPHN
ntrX; nitrogen assimilation regulatory protein NtrX
Nitrogen assimilation regulatory protein NtrX {ECO:0000313|EMBL:BAK66470.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4429_4
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2412..4688)
DNA (2277bp) protein (759aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nitrogen regulation protein NtrY n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW1_9SPHN
ntrY; nitrogen regulation protein NtrY
SCN18_30_10_14_R1_B_scaffold_4429_5
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4822..6273)
DNA (1452bp) protein (484aa)
Nitrogen assimilation regulatory protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW2_9SPHN
ntrC; nitrogen assimilation regulatory protein
Nitrogen assimilation regulatory protein {ECO:0000313|EMBL:BAK66472.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4429_6
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6270..7289)
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Nitrogen regulation protein NtrB n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW3_9SPHN
ntrB; nitrogen regulation protein NtrB
SCN18_30_10_14_R1_B_scaffold_4429_7
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7279..8307)
DNA (1029bp) protein (343aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
tRNA-dihydrouridine synthase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW4_9SPHN
putative tRNA-dihydrouridine synthase
SCN18_30_10_14_R1_B_scaffold_4429_8
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8475..9650
DNA (1176bp) protein (392aa)
Bifunctional enzyme IspD/IspF n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW5_9SPHN
ispD_ispF; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Bifunctional enzyme IspD/IspF {ECO:0000256|HAMAP-Rule:MF_01520, ECO:0000256|SAAS:SAAS00096235}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4429_9
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9647..10276
DNA (630bp) protein (210aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW6_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66476.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_4429_10
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10219..10650)
DNA (432bp) protein (144aa)
Putative oligoketide cyclase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ISW7_9SPHN
putative oligoketide cyclase
Putative oligoketide cyclase {ECO:0000313|EMBL:BAK66477.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying 10 items

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