ggKbase home page

SCN18_30_10_14_R1_B_scaffold_4696

Search features with annotation key words

Displaying 5 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_4696_1
SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, SCNpilot_P_inoc_Plasmid_64_5.7, Plasmid-like

Not on your lists

1..141
DNA (141bp) protein (47aa)
LuxR-family transcriptional regulator n=1 Tax=Sphingobium japonicum (strain NBRC 101211 / UT26S) RepID=D4YY74_SPHJU
autoinducer-binding domain-containing protein
Autoinducer-binding domain protein {ECO:0000313|EMBL:AEG51746.1}; TaxID=690566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum L-1.;"
SCN18_30_10_14_R1_B_scaffold_4696_2
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(138..3107)
DNA (2970bp) protein (990aa)
Transposase Tn3 family protein n=2 Tax=Sphingomonadaceae RepID=M4S9Q8_9SPHN
transposase Tn3 family protein
Putative Tn3 family transposase {ECO:0000313|EMBL:EZP65882.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
SCN18_30_10_14_R1_B_scaffold_4696_3
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3248..3817
DNA (570bp) protein (190aa)
Transcriptional regulator, Fis family n=2 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F431_SPHCR
Fis family transcriptional regulator
Resolvase {ECO:0000313|EMBL:KGB54468.1}; TaxID=1120705 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC363.;"
SCN18_30_10_14_R1_B_scaffold_4696_4
scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, scnpilot_dereplicated_Plasmid_Burkholderiales_2, Plasmid-like

Not on your lists

3818..5191
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4SBX1_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KER34652.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_4696_5
CN-SCN_Sphingomonas_18x, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5263..5838)
DNA (576bp) protein (192aa)
Resolvase, N terminal domain protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X0W4_9SPHN
Recombinase {ECO:0000313|EMBL:AJR27120.1}; TaxID=484429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. YBL2.;"
recombinase
Displaying 5 items

View Taxonomy