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SCN18_30_10_14_R1_B_scaffold_1660

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R1_B_scaffold_1660_1
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1334)
DNA (1332bp) protein (444aa)
ABC transporter n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IW40_9SPHN
Transport ATP-binding protein cydD {ECO:0000313|EMBL:GAO54120.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
ABC transporter-like protein
SCN18_30_10_14_R1_B_scaffold_1660_2
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1406..2398)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CS22_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:AHE54783.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1660_3
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2527..3615)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3V7_NOVAD
Uncharacterized protein {ECO:0000313|EMBL:AHE54784.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1660_4
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3649..4005)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CN58_SPHYA
Uncharacterized protein {ECO:0000313|EMBL:EKU73734.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1660_5
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4002..5462)
DNA (1461bp) protein (487aa)
Radical SAM n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G3V9_NOVAD
Radical SAM protein {ECO:0000313|EMBL:KHK90439.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
radical SAM family protein
SCN18_30_10_14_R1_B_scaffold_1660_6
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5459..7288)
DNA (1830bp) protein (610aa)
Quinohemoprotein amine dehydrogenase n=1 Tax=Sphingobium ummariense RL-3 RepID=T0IW33_9SPHN
Quinohemoprotein amine dehydrogenase {ECO:0000313|EMBL:EQB29991.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
quinohemoprotein amine dehydrogenase, 60 kDa subunit
SCN18_30_10_14_R1_B_scaffold_1660_7
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7406..7918)
DNA (513bp) protein (171aa)
cytochrome C n=1 Tax=Sphingobium xenophagum RepID=UPI0002DAECDC
Uncharacterized protein {ECO:0000313|EMBL:AHE54788.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
cytochrome c class I
SCN18_30_10_14_R1_B_scaffold_1660_8
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7927..8472)
DNA (546bp) protein (182aa)
methylamine dehydrogenase light chain n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003792220
Methylamine dehydrogenase light chain {ECO:0000313|EMBL:EKU75933.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
amine dehydrogenase
SCN18_30_10_14_R1_B_scaffold_1660_9
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8498..9100)
DNA (603bp) protein (201aa)
methylamine utilization protein MauD n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003728C6A
Methylamine utilization protein MauD {ECO:0000313|EMBL:KFD28717.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
redoxin domain-containing protein
SCN18_30_10_14_R1_B_scaffold_1660_10
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9107..9646)
DNA (540bp) protein (180aa)
methylamine utilization protein mauE n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C30D
Methylamine utilization protein MauE {ECO:0000313|EMBL:KFD28718.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
methylamine utilization protein MauE
SCN18_30_10_14_R1_B_scaffold_1660_11
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9649..10818)
DNA (1170bp) protein (390aa)
amine dehydrogenase (EC:1.4.99.3)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0K0G4_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AHE54792.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SCN18_30_10_14_R1_B_scaffold_1660_12
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10953..12134)
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CUQ6_SPHYA
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:KEZ18268.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae (Sphingomonas yanoikuyae).;"
SCN18_30_10_14_R1_B_scaffold_1660_13
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12213..12878)
DNA (666bp) protein (222aa)
Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G7M9_NOVAD
TetR family transcriptional regulator {ECO:0000313|EMBL:KHK90195.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
TetR family transcriptional regulator
SCN18_30_10_14_R1_B_scaffold_1660_14
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13313..13582
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CD80_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAR50598.1}; TaxID=314256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola granulosus (strain ATCC BAA-861 / DSM 15982 / KCTC 12143 /; HTCC2516).;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1660_15
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13740..15056)
DNA (1317bp) protein (439aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Two-component system sensor histidine kinase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS8_9SPHN
two-component system sensor histidine kinase
SCN18_30_10_14_R1_B_scaffold_1660_16
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15056..15769)
DNA (714bp) protein (238aa)
OmpR family two-component system response regulator n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILS7_9SPHN
OmpR family two-component system response regulator
OmpR family two-component system response regulator {ECO:0000313|EMBL:BAK67670.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_17
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16021..16284)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KER35265.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
SCN18_30_10_14_R1_B_scaffold_1660_18
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16907..18190)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9WE24_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EIZ78486.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1660_19
SCNPILOT_CONT_500_BF_Rhizobiales_64_17, SCNPILOT_CONT_500_BF_Rhizobiales_64_17, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18271..18648)
DNA (378bp) protein (126aa)
Integral membrane sensor hybrid histidine kinase n=1 Tax=Sphingobium chlorophenolicum L-1 RepID=F6F290_SPHCR
integral membrane sensor hybrid histidine kinase
Integral membrane sensor hybrid histidine kinase {ECO:0000313|EMBL:KEQ53865.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
SCN18_30_10_14_R1_B_scaffold_1660_20
Rhodanobacter spathiphylli_SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_67_34, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18602..19873)
DNA (1272bp) protein (424aa)
Signal transduction histidine kinase n=2 Tax=Sphingobium RepID=I5B9Y1_9SPHN
Histidine kinase {ECO:0000313|EMBL:EQB09114.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
signal transduction histidine kinase
SCN18_30_10_14_R1_B_scaffold_1660_21
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20202..21146
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K248_AGRVS
Uncharacterized protein {ECO:0000313|EMBL:AKH42274.1}; Flags: Precursor;; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Altererythrobacter atlanticus.;"
hypothetical protein
SCN18_30_10_14_R1_B_scaffold_1660_22
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21228..22892
DNA (1665bp) protein (555aa)
Major facilitator superfamily protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IIU7_9SPHN
major facilitator superfamily protein
Major facilitator superfamily protein {ECO:0000313|EMBL:BAK64777.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_23
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23014..23874
DNA (861bp) protein (287aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM67_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK65322.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_24
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23886..24536)
DNA (651bp) protein (217aa)
Putative methyltransferase {ECO:0000313|EMBL:BAK65323.1}; EC=2.1.1.- {ECO:0000313|EMBL:BAK65323.1};; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Putative methyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM68_9SPHN
putative methyltransferase
SCN18_30_10_14_R1_B_scaffold_1660_25
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24937..25782)
DNA (846bp) protein (282aa)
Putative hydrolase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM69_9SPHN
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:BAK65324.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_26
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25930..27363)
DNA (1434bp) protein (478aa)
Putative carboxyltransferase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM70_9SPHN
putative carboxyltransferase
Putative carboxyltransferase {ECO:0000313|EMBL:BAK65325.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_27
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27436..28632)
DNA (1197bp) protein (399aa)
xccC; biotin carboxylase (EC:6.3.4.14)
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein n=1 Tax=Streptomyces ipomoeae 91-03 RepID=L1KXH3_9ACTO
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein {ECO:0000313|EMBL:EKX65249.1}; TaxID=698759 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ipomoeae 91-03.;"
SCN18_30_10_14_R1_B_scaffold_1660_28
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28771..29229)
DNA (459bp) protein (153aa)
Biotin carboxyl carrier protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM72_9SPHN
biotin carboxyl carrier protein
Biotin carboxyl carrier protein {ECO:0000313|EMBL:BAK65327.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_29
SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29230..30267)
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM73_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65328.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCN18_30_10_14_R1_B_scaffold_1660_30
SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, SCNPILOT_EXPT_1000_BF_Altererythrobacter_66_12, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30411..30572)
DNA (162bp) protein (54aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IM74_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65329.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
Displaying items 1-30 of 38 in total

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