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SCN18_10_11_15_R5_B_scaffold_105

Search features with annotation key words

Displaying items 1-30 of 120 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_10_11_15_R5_B_scaffold_105_1
SCNPILOT_CONT_300_BF_Flavobacteriales_39_5_fragment, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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3..935
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MF84_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE05070.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
SCN18_10_11_15_R5_B_scaffold_105_2
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1060..1926
DNA (867bp) protein (289aa)
alpha/beta hydrolase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034A2DBF
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:KFC69254.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
alpha/beta hydrolase domain-containing protein
SCN18_10_11_15_R5_B_scaffold_105_3
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1939..2343)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JY05_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35035.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCN18_10_11_15_R5_B_scaffold_105_4
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2433..2840)
DNA (408bp) protein (136aa)
membrane protein n=1 Tax=Janthinobacterium lividum RepID=UPI0002887900
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM96514.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCN18_10_11_15_R5_B_scaffold_105_5
CN-SCN_Devosia_27x, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3061..4449
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003755E06
NADH-ubiquinone oxidoreductase subunit 6 {ECO:0000313|EMBL:KKC39899.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
amine oxidase
SCN18_10_11_15_R5_B_scaffold_105_6
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4446..5231
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000369917C
Uncharacterized protein {ECO:0000313|EMBL:KDP71607.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_105_7
Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5241..6599
DNA (1359bp) protein (453aa)
Major facilitator transporter n=2 Tax=Rhodospirillum rubrum RepID=G2TB10_RHORU
major facilitator superfamily transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABC21530.1}; Flags: Precursor;; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCN18_10_11_15_R5_B_scaffold_105_8
SCNPILOT_CONT_1000_BF_Rhizobiales_65_18, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6584..7573)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C8F36
Oxidoreductase {ECO:0000313|EMBL:KKC39579.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
short-chain dehydrogenase/reductase SDR
SCN18_10_11_15_R5_B_scaffold_105_9
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7715..9052
DNA (1338bp) protein (446aa)
Major facilitator superfamily MFS_1 n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M8G1_METRJ
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACB27786.1}; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
SCN18_10_11_15_R5_B_scaffold_105_10
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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9133..9624
DNA (492bp) protein (164aa)
tRNA-adenosine deaminase (EC:3.5.4.-)
Cytosine/adenosine deaminase id=4391093 bin=GWC2_Methylomirabilis_70_16 species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCN18_10_11_15_R5_B_scaffold_105_11
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9698..11209
DNA (1512bp) protein (504aa)
Amidohydrolase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y8X1_9RHIZ
Amidohydrolase {ECO:0000313|EMBL:EMS43286.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
amidohydrolase
SCN18_10_11_15_R5_B_scaffold_105_12
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11351..12097
DNA (747bp) protein (249aa)
Transcriptional regulator, GntR family n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A2K9_STAND
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADH91539.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCN18_10_11_15_R5_B_scaffold_105_13
SCNPILOT_EXPT_1000_BF_Mesorhizobium_61_14, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12111..12875
DNA (765bp) protein (255aa)
Asp/Glu/hydantoin racemase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF9_RALPI
Asp/Glu/hydantoin racemase
Asp/Glu/hydantoin racemase {ECO:0000313|EMBL:AGW91836.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
SCN18_10_11_15_R5_B_scaffold_105_14
SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, SCNPILOT_CONT_750_BF_Sphingobacteriales_50_21, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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13058..13447
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DE1235
SnoaL-like domain protein {ECO:0000313|EMBL:CEJ11591.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_105_15
unknown

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comp(13573..13872)
DNA (300bp) protein (100aa)

This feature has no annotations

SCN18_10_11_15_R5_B_scaffold_105_16
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14089..14991)
DNA (903bp) protein (301aa)
LysR family transcriptional regulator n=1 Tax=Burkholderia sp. YI23 RepID=G8MH92_9BURK
lysR; LysR family transcriptional regulator
LysR family transcriptional regulator {ECO:0000313|EMBL:AET92959.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCN18_10_11_15_R5_B_scaffold_105_17
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14997..15329)
DNA (333bp) protein (111aa)
Putative ferredoxin n=1 Tax=Variovorax paradoxus B4 RepID=T1XDQ8_VARPD
putative ferredoxin
Putative ferredoxin {ECO:0000313|EMBL:AGU50596.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCN18_10_11_15_R5_B_scaffold_105_18
SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15336..16112)
DNA (777bp) protein (259aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E6DC4E
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AET92961.1}; TaxID=1097668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. YI23.;"
SCN18_10_11_15_R5_B_scaffold_105_19
SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_13, Actinobacteria, Actinobacteria, Bacteria

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comp(16112..17302)
DNA (1191bp) protein (397aa)
Putative acyl-CoA transferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V0G6_9RHIZ
Putative acyl-CoA transferase {ECO:0000313|EMBL:ENN84602.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCN18_10_11_15_R5_B_scaffold_105_20
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17299..18678)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031A2EF3
Invasion protein {ECO:0000313|EMBL:KGM31874.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
ibeA; Invasion protein IbeA
SCN18_10_11_15_R5_B_scaffold_105_21
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18696..19526)
DNA (831bp) protein (277aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Cupriavidus basilensis OR16 RepID=H1S3D8_9BURK
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHP42940.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
binding-protein-dependent transport systems inner membrane component
SCN18_10_11_15_R5_B_scaffold_105_22
SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, SCNPILOT_CONT_1000_BF_Rhizobiales_65_79, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19523..20302)
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E93E8C
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KDR43713.1}; Pyrimidine ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CDY75676.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
ABC transporter
SCN18_10_11_15_R5_B_scaffold_105_23
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20395..21408)
DNA (1014bp) protein (338aa)
Twin-arginine translocation pathway signal n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WNM1_VEREI
twin-arginine translocation pathway signal protein
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABM59228.1}; Flags: Precursor;; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCN18_10_11_15_R5_B_scaffold_105_24
SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, SCNPILOT_CONT_1000_BF_Chloroflexi_54_27, Bacteria

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21597..22859
DNA (1263bp) protein (421aa)
5-methylthioadenosine/S-adenosylhomocysteine deaminase {ECO:0000256|HAMAP-Rule:MF_01281}; Short=MTA/SAH deaminase {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.28 {ECO:0000256|HAMAP-Rule:MF_01281};; EC=3.5.4.31 {ECO:0000256|HAMAP-Rule:MF_01281};; TaxID=1629708 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatitalea sp. BRH_c12.;"
5-methylthioadenosine/S-adenosylhomocysteine deaminase n=2 Tax=Methanosarcina mazei RepID=MTAD_METMA
N-ethylammeline chlorohydrolase
SCN18_10_11_15_R5_B_scaffold_105_25
SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, SCNPILOT_EXPT_750_BF_Burkholderiales_68_35, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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23200..24198
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Arthrobacter sp. 161MFSha2.1 RepID=UPI00035F3B3D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJC22878.1}; TaxID=93221 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pulmonicola.;"
SCN18_10_11_15_R5_B_scaffold_105_26
Nitrosospira multiformis_SCNPILOT_SOLID_1_TRIM150_Nitrosospira_54_27, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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24349..25344
DNA (996bp) protein (332aa)
Protein involved in meta-pathway of phenol degradation n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QQT9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC60321.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
meta-pathway phenol degradation-like protein
SCN18_10_11_15_R5_B_scaffold_105_27
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25492..26229
DNA (738bp) protein (246aa)
Predicted protein n=1 Tax=Streptomyces sp. AA4 RepID=D9V7B6_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KER74012.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia (Pseudomonas cepacia).;"
putative hydrolase
SCN18_10_11_15_R5_B_scaffold_105_28
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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26256..26702
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RJP7_BLASD
Uncharacterized protein {ECO:0000313|EMBL:KIF65875.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
hypothetical protein
SCN18_10_11_15_R5_B_scaffold_105_29
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26908..27480)
DNA (573bp) protein (191aa)
ChrB domain-containing protein n=1 Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RCA8_DESPD
Uncharacterized protein {ECO:0000313|EMBL:CEG10551.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
ChrB domain-containing protein
SCN18_10_11_15_R5_B_scaffold_105_30
Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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27637..28386
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IZK2_9SPHN
Membrane protein {ECO:0000313|EMBL:KFL29775.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
mntH; manganese transporter protein
Displaying items 1-30 of 120 in total

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