ggKbase home page

SCN18_31_3_15_R4_B_scaffold_2557

Search features with annotation key words

Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_2557_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..352)
DNA (351bp) protein (117aa)
Methyltransferase type 11 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IC51_XANP2
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABS65594.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCN18_31_3_15_R4_B_scaffold_2557_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378..1412)
DNA (1035bp) protein (345aa)
aphA; Acetylpolyamine aminohydrolase (EC:3.5.1.98)
Putative acetylpolyamine aminohydrolase n=1 Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U2ZSF8_PSEAC
Putative acetylpolyamine aminohydrolase {ECO:0000313|EMBL:GAD64022.1}; TaxID=1215092 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes NBRC 14159.;"
SCN18_31_3_15_R4_B_scaffold_2557_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1409..2248)
DNA (840bp) protein (280aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8Z7_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJP70830.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCN18_31_3_15_R4_B_scaffold_2557_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2352..3485
DNA (1134bp) protein (378aa)
Alanine racemase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQQ4_PARL1
alanine racemase domain-containing protein
Alanine racemase domain protein {ECO:0000313|EMBL:ABS62237.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_2557_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3576..4037
DNA (462bp) protein (154aa)
Putative transmembrane protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KKF7_RHISN
membrane protein
Tax=BJP_IG2102_BRC1_58_13
SCN18_31_3_15_R4_B_scaffold_2557_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4197..5015
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Plasmodium yoelii 17X RepID=V7PRD0_9APIC
Uncharacterized protein {ECO:0000313|EMBL:EUD74323.1}; TaxID=138298 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Vinckeia).;" source="Plasmodium vinckei petteri.;"
SCN18_31_3_15_R4_B_scaffold_2557_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5154..5672
DNA (519bp) protein (173aa)
U1 small nuclear ribonucleoprotein, putative n=1 Tax=Plasmodium falciparum (isolate 3D7) RepID=Q8ID37_PLAF7
U1 small nuclear ribonucleoprotein, putative {ECO:0000313|EMBL:CDO66450.1}; TaxID=5854 species="Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).;" source="Plasmodium reichenowi.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_2557_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5834..6952
DNA (1119bp) protein (373aa)
Alanine dehydrogenase {ECO:0000256|PIRNR:PIRNR000183, ECO:0000313|EMBL:CCC98163.1}; EC=1.4.1.1 {ECO:0000256|PIRNR:PIRNR000183, ECO:0000313|EMBL:CCC98163.1};; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
Alanine dehydrogenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8ALQ1_AZOBR
ald; alanine dehydrogenase
SCN18_31_3_15_R4_B_scaffold_2557_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7212..7850
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0BHV1_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK59740.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCN18_31_3_15_R4_B_scaffold_2557_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7881..8822)
DNA (942bp) protein (314aa)
hypothetical protein n=1 Tax=Nodosilinea nodulosa RepID=UPI0002FCBEA6
Putative aldo/keto reductase {ECO:0000313|EMBL:GAO38661.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
aldo/keto reductase
Displaying 10 items

View Taxonomy