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SCN18_31_3_15_R4_B_scaffold_2942

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_2942_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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3..833
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035E71F1
ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:GAK34132.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
ATP-dependent RNA helicase
SCN18_31_3_15_R4_B_scaffold_2942_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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845..1063
DNA (219bp) protein (73aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCN18_31_3_15_R4_B_scaffold_2942_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1066..1629)
DNA (564bp) protein (188aa)
Response regulator receiver protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11B17_MESSB
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABG65408.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCN18_31_3_15_R4_B_scaffold_2942_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1678..3021)
DNA (1344bp) protein (448aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP07_PARL1
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABS61640.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_2942_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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3188..3778
DNA (591bp) protein (197aa)
Classical-complement-pathway C3/C5 convertase {ECO:0000313|EMBL:ABS61637.1}; EC=3.4.21.43 {ECO:0000313|EMBL:ABS61637.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Classical-complement-pathway C3/C5 convertase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP04_PARL1
Classical-complement-pathway C3/C5 convertase
SCN18_31_3_15_R4_B_scaffold_2942_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3775..4659)
DNA (885bp) protein (295aa)
5,10-methylene-tetrahydrofolate dehydrogenase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6FFD8
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
methenyltetrahydrofolate cyclohydrolase
SCN18_31_3_15_R4_B_scaffold_2942_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4656..4973)
DNA (318bp) protein (106aa)
UPF0235 protein QWE_02230 n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QBS1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KKN89004.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_2942_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4970..5263)
DNA (294bp) protein (98aa)
Bacterioferritin protein n=1 Tax=alpha proteobacterium RS24 RepID=U2XUR5_9PROT
Bacterioferritin protein {ECO:0000313|EMBL:ERL46491.1}; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_2942_trna_1
unknown

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5466..5538
DNA (73bp)
transferRNA Ala
SCN18_31_3_15_R4_B_scaffold_2942_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5568..6803)
DNA (1236bp) protein (412aa)
L-sorbosone dehydrogenase n=1 Tax=Azospirillum amazonense Y2 RepID=G1XW04_9PROT
L-sorbosone dehydrogenase {ECO:0000313|EMBL:EGY02554.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
L-sorbosone dehydrogenase
SCN18_31_3_15_R4_B_scaffold_2942_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6916..7344
DNA (429bp) protein (143aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A86F3D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI64352.1}; Flags: Precursor;; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCN18_31_3_15_R4_B_scaffold_2942_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7356..7883)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI000315B242
short chain dehydrogenase
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABS62988.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Displaying 12 items

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