ggKbase home page

SCN18_31_3_15_R4_B_scaffold_1214

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1214_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..1643
DNA (1641bp) protein (547aa)
Na+/solute symporter n=1 Tax=Burkholderia cepacia GG4 RepID=J7J0G6_BURCE
Sodium:solute symporter {ECO:0000313|EMBL:KJE53138.1}; TaxID=1571773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. USM B20.;"
Na+/solute symporter
SCN18_31_3_15_R4_B_scaffold_1214_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1659..2444)
DNA (786bp) protein (262aa)
Putative phosphate ABC transporter ATPase subunit n=1 Tax=uncultured prokaryote AT5 RepID=D3W8H4_9ZZZZ
Putative phosphate ABC transporter ATPase subunit {ECO:0000313|EMBL:ACX33923.1}; TaxID=672203 species="unclassified sequences; environmental samples.;" source="uncultured prokaryote AT5.;"
phosphate ABC transporter ATPase
SCN18_31_3_15_R4_B_scaffold_1214_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2441..3289)
DNA (849bp) protein (283aa)
phosphate transporter permease subunit PtsA n=1 Tax=Methylocystis rosea RepID=UPI00036910BA
phosphate ABC transporter, inner membrane subunit PstA
Phosphate ABC transporter, inner membrane subunit PstA {ECO:0000313|EMBL:CCJ07858.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_31_3_15_R4_B_scaffold_1214_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3290..4276)
DNA (987bp) protein (329aa)
UPI0003CF5188 related cluster n=1 Tax=unknown RepID=UPI0003CF5188
Phosphate transporter permease subunit PstC {ECO:0000313|EMBL:ESW81092.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
phosphate ABC transporter, permease protein PstC
SCN18_31_3_15_R4_B_scaffold_1214_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4351..5391)
DNA (1041bp) protein (347aa)
Phosphate-binding protein PstS n=1 Tax=Methylocystis sp. (strain SC2) RepID=J7QHR2_METSZ
phosphate ABC transporter, periplasmic phosphate-binding protein
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCN18_31_3_15_R4_B_scaffold_1214_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5713..7920
DNA (2208bp) protein (736aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ60_PARL1
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:GAK43783.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
PAS/PAC sensor hybrid histidine kinase
SCN18_31_3_15_R4_B_scaffold_1214_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7973..9346
DNA (1374bp) protein (458aa)
Major facilitator superfamily MFS_1 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCA1_PHEZH
Beta-lactamase {ECO:0000313|EMBL:KHD30668.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
major facilitator superfamily protein
SCN18_31_3_15_R4_B_scaffold_1214_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9424..10278
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ62_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65195.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_31_3_15_R4_B_scaffold_1214_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10423..11370)
DNA (948bp) protein (316aa)
glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magneticum (strain AMB-1 / ATCC 700264).;"
Glutathione synthetase n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2VYL5_MAGSA
SCN18_31_3_15_R4_B_scaffold_1214_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11392..12210)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4D6_AZOL4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS88287.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCN18_31_3_15_R4_B_scaffold_1214_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12224..12598)
DNA (375bp) protein (125aa)
UPF0102 protein BAL199_11231 n=1 Tax=alpha proteobacterium BAL199 RepID=A8U078_9PROT
UPF0102 protein HJA_15299 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1280952 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas jannaschiana VP2.;"
hypothetical protein
SCN18_31_3_15_R4_B_scaffold_1214_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12591..13499)
DNA (909bp) protein (303aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1280944 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. CY54-11-8.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C452_HYPNA
tetrapyrrole methylase family protein
SCN18_31_3_15_R4_B_scaffold_1214_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13568..14845
DNA (1278bp) protein (426aa)
Extracellular ligand-binding receptor n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ49_PARL1
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDO59818.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
extracellular ligand-binding receptor
SCN18_31_3_15_R4_B_scaffold_1214_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14873..15280
DNA (408bp) protein (136aa)
Glutathione-dependent formaldehyde-activating protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N725_9RHIZ
glutathione-dependent formaldehyde-activating protein
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_24_curated
SCN18_31_3_15_R4_B_scaffold_1214_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15394..16545)
DNA (1152bp) protein (384aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ABY28825.1}; EC=1.3.99.22 {ECO:0000313|EMBL:ABY28825.1};; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
coproporphyrinogen III oxidase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034C292A
SCN18_31_3_15_R4_B_scaffold_1214_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(16542..17054)
DNA (513bp) protein (171aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1207058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. L-53-1-40.;"
Non-canonical purine NTP pyrophosphatase n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BX10_HYPNA
rdgB; non-canonical purine NTP pyrophosphatase
Displaying 16 items

View Taxonomy