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SCN18_31_3_15_R4_B_scaffold_1218

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_31_3_15_R4_B_scaffold_1218_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27..1061)
DNA (1035bp) protein (345aa)
NADH-quinone oxidoreductase subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000255|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000255|HAMAP-Rule:MF_01350}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
NADH-quinone oxidoreductase subunit H n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=NUOH_PARL1
NADH dehydrogenase subunit H
SCN18_31_3_15_R4_B_scaffold_1218_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1063..3192)
DNA (2130bp) protein (710aa)
NADH dehydrogenase subunit G n=1 Tax=Amorphus coralli RepID=UPI00035E7C06
NADH dehydrogenase subunit G {ECO:0000313|EMBL:GAK44563.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NADH:ubiquinone oxidoreductase, subunit G
SCN18_31_3_15_R4_B_scaffold_1218_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3192..3629)
DNA (438bp) protein (146aa)
SCN18_31_3_15_R4_B_scaffold_1218_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3635..4921)
DNA (1287bp) protein (429aa)
NADH dehydrogenase n=1 Tax=Novispirillum itersonii RepID=UPI0003789CA3
NADH dehydrogenase I subunit F
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_31_3_15_R4_B_scaffold_1218_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4921..5592)
DNA (672bp) protein (224aa)
NADH-quinone oxidoreductase, E subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY45_PARL1
NADH-quinone oxidoreductase subunit E {ECO:0000313|EMBL:GAK44565.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NADH-quinone oxidoreductase subunit E
SCN18_31_3_15_R4_B_scaffold_1218_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5589..6776)
DNA (1188bp) protein (396aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADH dehydrogenase subunit D n=1 Tax=Robiginitomaculum antarcticum RepID=UPI00037A922A
NADH dehydrogenase I subunit D
SCN18_31_3_15_R4_B_scaffold_1218_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6773..7384)
DNA (612bp) protein (204aa)
NADH dehydrogenase subunit C (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00036C1C63
SCN18_31_3_15_R4_B_scaffold_1218_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7394..7966)
DNA (573bp) protein (191aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
NADH-quinone oxidoreductase subunit B n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LL28_RHITR
nuoB; NADH-quinone oxidoreductase subunit b
SCN18_31_3_15_R4_B_scaffold_1218_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7957..8322)
DNA (366bp) protein (122aa)
NAD(P)H-quinone oxidoreductase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.- {ECO:0000256|HAMAP-Rule:MF_01394};; NAD(P)H dehydrogenase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; NADH-plastoquinone oxidoreductase subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit 3 {ECO:0000256|HAMAP-Rule:MF_01394}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
NADH-quinone oxidoreductase subunit A n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY49_PARL1
NADH-ubiquinone/plastoquinone oxidoreductase chain 3
SCN18_31_3_15_R4_B_scaffold_1218_trna_3
unknown

Not on your lists

comp(8595..8668)
DNA (74bp)
transferRNA Asp
SCN18_31_3_15_R4_B_scaffold_1218_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8740..9249)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037514F9
Sphingomonas taxi strain 30a NODE_32, whole genome shotgun sequence {ECO:0000313|EMBL:KIU29147.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCN18_31_3_15_R4_B_scaffold_1218_trna_1
unknown

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9351..9423
DNA (73bp)
transferRNA Val
SCN18_31_3_15_R4_B_scaffold_1218_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9548..9820)
DNA (273bp) protein (91aa)
Histone-like DNA-binding protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TM30_TISMK
histone-like DNA-binding protein
Histone-like DNA-binding protein {ECO:0000313|EMBL:AFK53818.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCN18_31_3_15_R4_B_scaffold_1218_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9998..12421)
DNA (2424bp) protein (808aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
ATP-dependent endopeptidase Lon (EC:3.4.21.53)
peptidase n=1 Tax=Elioraea tepidiphila RepID=UPI00037A5E36
SCN18_31_3_15_R4_B_scaffold_1218_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12609..13874)
DNA (1266bp) protein (422aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4QZC5_9RHIZ
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX
SCN18_31_3_15_R4_B_scaffold_1218_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14111..14755)
DNA (645bp) protein (215aa)
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Roseibium sp. TrichSKD4 RepID=E2CCC6_9RHOB
Tax=RBG_16_Alphaproteobacteria_64_48_curated
SCN18_31_3_15_R4_B_scaffold_1218_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14838..16244)
DNA (1407bp) protein (469aa)
Trigger factor {ECO:0000255|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000255|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000255|HAMAP-Rule:MF_00303};; PPIase {ECO:0000255|HAMAP-Rule:MF_00303}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Trigger factor n=2 Tax=Parvibaculum RepID=TIG_PARL1
tig; trigger factor
SCN18_31_3_15_R4_B_scaffold_1218_trna_2
unknown

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comp(16301..16381)
DNA (81bp)
transferRNA Leu
SCN18_31_3_15_R4_B_scaffold_1218_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16478..17011)
DNA (534bp) protein (178aa)
UPI0003D5C471 related cluster n=1 Tax=unknown RepID=UPI0003D5C471
Phosphinothricin N-acetyltransferase {ECO:0000313|EMBL:ETI60702.1}; TaxID=1208321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas profundimaris.;"
N-acetyltransferase GCN5
Displaying 19 items

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