ggKbase home page

SCN18_14_9_16_R3_B_scaffold_1421

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_14_9_16_R3_B_scaffold_1421_1
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..231
-----------------
DNA (231bp)
protein (77aa)
Transcriptional regulator {ECO:0000313|EMBL:GAN44995.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
YCII-related protein
SCN18_14_9_16_R3_B_scaffold_1421_2
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

259..636
-----------------
DNA (378bp)
protein (126aa)
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI00031BA167
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ61014.1}; TaxID=326424 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
SCN18_14_9_16_R3_B_scaffold_1421_3
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

673..1083
-----------------
DNA (411bp)
protein (137aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y993_NITMU
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABB74678.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCN18_14_9_16_R3_B_scaffold_1421_4
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1133..1579
-----------------
DNA (447bp)
protein (149aa)
hypothetical protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI000380F798
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ73332.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCN18_14_9_16_R3_B_scaffold_1421_5
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1576..2028
-----------------
DNA (453bp)
protein (151aa)
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REJ4_PHEZH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACG76936.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCN18_14_9_16_R3_B_scaffold_1421_6
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2212..3462
-----------------
DNA (1251bp)
protein (417aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW11_PARL1
DEAD/DEAH box helicase
ATP-dependent RNA helicase RhlE {ECO:0000313|EMBL:GAK34132.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
SCN18_14_9_16_R3_B_scaffold_1421_7
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3474..3692
-----------------
DNA (219bp)
protein (73aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
SCN18_14_9_16_R3_B_scaffold_1421_8
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3695..4258)
-----------------
DNA (564bp)
protein (188aa)
Response regulator receiver protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11B17_MESSB
response regulator receiver protein
Response regulator receiver protein {ECO:0000313|EMBL:ABG65408.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCN18_14_9_16_R3_B_scaffold_1421_9
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4307..5650)
-----------------
DNA (1344bp)
protein (448aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP07_PARL1
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:ABS61640.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_14_9_16_R3_B_scaffold_1421_10
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5817..6407
-----------------
DNA (591bp)
protein (197aa)
Classical-complement-pathway C3/C5 convertase {ECO:0000313|EMBL:ABS61637.1}; EC=3.4.21.43 {ECO:0000313|EMBL:ABS61637.1};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
Classical-complement-pathway C3/C5 convertase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP04_PARL1
Classical-complement-pathway C3/C5 convertase
SCN18_14_9_16_R3_B_scaffold_1421_11
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6404..7288)
-----------------
DNA (885bp)
protein (295aa)
5,10-methylene-tetrahydrofolate dehydrogenase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6FFD8
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=195105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter massiliensis.;"
methenyltetrahydrofolate cyclohydrolase
SCN18_14_9_16_R3_B_scaffold_1421_12
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7285..7602)
-----------------
DNA (318bp)
protein (106aa)
UPI0003CECE65 related cluster n=1 Tax=unknown RepID=UPI0003CECE65
Uncharacterized protein {ECO:0000313|EMBL:KKN89004.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
SCN18_14_9_16_R3_B_scaffold_1421_13
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7599..7892)
-----------------
DNA (294bp)
protein (98aa)
Bacterioferritin protein n=1 Tax=alpha proteobacterium RS24 RepID=U2XUR5_9PROT
Bacterioferritin protein {ECO:0000313|EMBL:ERL46491.1}; TaxID=1397666 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium RS24.;"
hypothetical protein
SCN18_14_9_16_R3_B_scaffold_1421_trna_1
unknown

Not on your lists

8095..8167
-----------------
DNA (73bp)
transferRNA Ala
SCN18_14_9_16_R3_B_scaffold_1421_14
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8196..9431)
-----------------
DNA (1236bp)
protein (412aa)
L-sorbosone dehydrogenase n=1 Tax=Azospirillum amazonense Y2 RepID=G1XW04_9PROT
L-sorbosone dehydrogenase {ECO:0000313|EMBL:EGY02554.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
L-sorbosone dehydrogenase
SCN18_14_9_16_R3_B_scaffold_1421_15
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9544..9972
-----------------
DNA (429bp)
protein (143aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A86F3D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI64352.1}; Flags: Precursor;; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCN18_14_9_16_R3_B_scaffold_1421_16
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9984..10772)
-----------------
DNA (789bp)
protein (263aa)
Putative 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0BX61_HYPNA
short chain dehydrogenase
Short chain dehydrogenase {ECO:0000313|EMBL:KCZ92068.1}; TaxID=1280951 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas hirschiana VP5.;"
SCN18_14_9_16_R3_B_scaffold_1421_17
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10805..11536)
-----------------
DNA (732bp)
protein (244aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037F3519
Uncharacterized protein {ECO:0000313|EMBL:GAO01974.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
type 11 methyltransferase
SCN18_14_9_16_R3_B_scaffold_1421_18
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11536..12339)
-----------------
DNA (804bp)
protein (268aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HS61_PARL1
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABS62744.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCN18_14_9_16_R3_B_scaffold_1421_19
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12529..13947
-----------------
DNA (1419bp)
protein (473aa)
Apolipoprotein N-acyltransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZS2_9RHIZ
Apolipoprotein N-acyltransferase {ECO:0000313|EMBL:ENN87115.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
SCN18_14_9_16_R3_B_scaffold_1421_20
SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13984..14298)
-----------------
DNA (315bp)
protein (105aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY90_PARL1
Conserved protein {ECO:0000313|EMBL:GAK45909.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
Displaying 21 items

View Taxonomy