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SCN18_26_2_15_R5_B_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_26_2_15_R5_B_scaffold_280_1
SCNpilot_P_inoc_Stenotrophomonas_69_27, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..839
DNA (837bp) protein (279aa)
Site-specific recombinase, DNA invertase Pin n=1 Tax=Novosphingobium sp. AP12 RepID=J2Q532_9SPHN
Site-specific recombinase, DNA invertase Pin {ECO:0000313|EMBL:EJL35297.1}; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;"
Resolvase, N-terminal
SCN18_26_2_15_R5_B_scaffold_280_2
unknown

Not on your lists

864..1115
DNA (252bp) protein (84aa)

This feature has no annotations

SCN18_26_2_15_R5_B_scaffold_280_3
unknown

Not on your lists

1425..1712
DNA (288bp) protein (96aa)

This feature has no annotations

SCN18_26_2_15_R5_B_scaffold_280_4
Rhizobium phage RHEph01, Caudovirales, Viruses

Not on your lists

1775..1954
DNA (180bp) protein (60aa)
Putative internal virion protein n=1 Tax=Rhizobium phage RHEph01 RepID=L7TMN3_9CAUD
Putative internal virion protein {ECO:0000313|EMBL:AGC35554.1}; TaxID=1220601 species="Viruses; dsDNA viruses, no RNA stage; Caudovirales; Podoviridae.;" source="Rhizobium phage RHEph01.;"
SCN18_26_2_15_R5_B_scaffold_280_5
SCNpilot_BF_INOC_Plasmid_Legionella_37_6, SCNpilot_BF_INOC_Plasmid_Legionella_37_6, SCNpilot_BF_INOC_Plasmid_Legionella_37_6, SCNpilot_BF_INOC_Plasmid_Legionella_37_6, SCNpilot_BF_INOC_Plasmid_Legionella_37_6, Plasmid-like

Not on your lists

comp(2612..4294)
DNA (1683bp) protein (561aa)
Putative uncharacterized protein n=1 Tax=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) RepID=Q0VRP1_ALCBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL16157.1}; TaxID=393595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689; / SK2).;"
SCN18_26_2_15_R5_B_scaffold_280_6
unknown

Not on your lists

comp(4332..4769)
DNA (438bp) protein (146aa)

This feature has no annotations

SCN18_26_2_15_R5_B_scaffold_280_7
unknown

Not on your lists

comp(4876..5244)
DNA (369bp) protein (123aa)

This feature has no annotations

SCN18_26_2_15_R5_B_scaffold_280_8
CN-SCN_Phenylobacterium_14x, CN-SCN_Phenylobacterium_14x, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5261..6331)
DNA (1071bp) protein (357aa)
Phage integrase n=2 Tax=Rhodospirillum rubrum RepID=Q2RP35_RHORT
phage integrase
Phage integrase {ECO:0000313|EMBL:ABC24110.1}; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCN18_26_2_15_R5_B_scaffold_280_9
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6341..6835)
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Methylotenera RepID=UPI0003716A14
integrase
Whole genome shotgun sequence {ECO:0000313|EMBL:KIT34244.1}; TaxID=1288787 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio parahaemolyticus 3355.;"
SCN18_26_2_15_R5_B_scaffold_280_trna_1
unknown

Not on your lists

comp(6935..7007)
DNA (73bp)
transferRNA Glu
SCN18_26_2_15_R5_B_scaffold_280_10
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7063..8883)
DNA (1821bp) protein (607aa)
Single-stranded-DNA-specific exonuclease recJ n=1 Tax=Oceanibaculum indicum P24 RepID=K2KE50_9PROT
single-stranded DNA exonuclease
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_11
SCNpilot_BF_INOC_Bordetella_67_10, SCNpilot_BF_INOC_Bordetella_67_10, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8980..9939
DNA (960bp) protein (320aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI0003773896
Uncharacterized protein {ECO:0000313|EMBL:EKS31262.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
polysaccharide deacetylase
SCN18_26_2_15_R5_B_scaffold_280_12
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9997..11562
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037E291D
Uncharacterized protein {ECO:0000313|EMBL:CDX40903.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
SCN18_26_2_15_R5_B_scaffold_280_13
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11641..12627)
DNA (987bp) protein (329aa)
glpX; fructose 1,6-bisphosphatase II (EC:3.1.3.11)
Fructose-1,6-bisphosphatase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMP3_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_14
SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, SCNPILOT_CONT_750_BF_Rhodospirillales_70_18, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12664..13956)
DNA (1293bp) protein (431aa)
Homoserine dehydrogenase n=1 Tax=Oceanibaculum indicum P24 RepID=K2JMF0_9PROT
homoserine dehydrogenase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_15
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13982..15238)
DNA (1257bp) protein (419aa)
Aminotransferase n=2 Tax=Rhodospirillum rubrum RepID=G2TF97_RHORU
aminotransferase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_16
SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, SCNpilot_BF_INOC_Solirubrobacterales_68_7, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15259..15945)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Takifugu rubripes RepID=H2SYR0_TAKRU
transmembrane protein
Uncharacterized protein {ECO:0000313|EMBL:ETW85115.1}; TaxID=747525 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Russulales; Bondarzewiaceae; Heterobasidion; Heterobasidion annosum species complex.;" source="Heterobasidion irregulare TC 32-1.;"
SCN18_26_2_15_R5_B_scaffold_280_17
SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, SCNPILOT_CONT_750_BF_Rhodospirillales_68_10, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16182..18008
DNA (1827bp) protein (609aa)
phbC; poly-beta-hydroxybutyrate polymerase (EC:2.3.1.-)
Poly-beta-hydroxybutyrate polymerase n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IMP7_RHOCS
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_18
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18025..18744)
DNA (720bp) protein (240aa)
ABC-type Co2+ transport system, periplasmic component n=1 Tax=Herbaspirillum sp. YR522 RepID=J2W7F3_9BURK
ABC-type Co2+ transport system, periplasmic component {ECO:0000313|EMBL:EZP41997.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
cobalt ABC transporter substrate-binding protein
SCN18_26_2_15_R5_B_scaffold_280_19
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18741..20297)
DNA (1557bp) protein (519aa)
PepSY-associated TM helix n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QH51_NITHX
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44674.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
PepSY-associated TM helix family protein
SCN18_26_2_15_R5_B_scaffold_280_20
scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, Mobile_element

Not on your lists

comp(20302..22761)
DNA (2460bp) protein (820aa)
Ferrichrome siderophore receptor FcuA n=1 Tax=Acetobacter pasteurianus NBRC 101655 RepID=H1UJJ6_ACEPA
ufrA; TonB-dependent siderophore receptor
Ferrichrome siderophore receptor FcuA {ECO:0000313|EMBL:GAB28827.1}; TaxID=1006554 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pasteurianus NBRC 101655.;"
SCN18_26_2_15_R5_B_scaffold_280_21
scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, scnpilot_dereplicated_Mobile_Alphaproteobacteria_1, Mobile_element

Not on your lists

comp(22891..23835)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H2N9_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EKV31852.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
two component sensor histidine kinase FecR/PupR
SCN18_26_2_15_R5_B_scaffold_280_22
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23878..24411)
DNA (534bp) protein (178aa)
Sigma-24 FecI protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HNE4_9PROT
Sigma-24 FecI protein {ECO:0000313|EMBL:EKV31853.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
sigma-24 (FecI)
SCN18_26_2_15_R5_B_scaffold_280_23
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24515..24994)
DNA (480bp) protein (160aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=745310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. MM-1.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4RXE4_9SPHN
ybaK/ebsC protein
SCN18_26_2_15_R5_B_scaffold_280_24
unknown

Not on your lists

25376..25744
DNA (369bp) protein (123aa)

This feature has no annotations

SCN18_26_2_15_R5_B_scaffold_280_25
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25815..26351)
DNA (537bp) protein (179aa)
Carbonic anhydrase/acetyltransferase n=1 Tax=Phaeospirillum fulvum MGU-K5 RepID=S9TSW3_PHAFV
carbonic anhydrase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_26
SCNPILOT_EXPT_300_BF_Novosphingobium_63_58, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26426..26914)
DNA (489bp) protein (163aa)
30S ribosomal protein S9 n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J907_9SPHN
30S ribosomal protein S9
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_27
Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(26916..27395)
DNA (480bp) protein (160aa)
50S ribosomal protein L13 n=2 Tax=Magnetospirillum gryphiswaldense RepID=A4TX40_9PROT
rplM; 50S ribosomal subunit protein L13
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_28
SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27511..27936)
DNA (426bp) protein (142aa)
phenylacetic acid degradation protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036D81F5
thioesterase superfamily protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
SCN18_26_2_15_R5_B_scaffold_280_29
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27972..28769
DNA (798bp) protein (266aa)
Enoyl-CoA hydratase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0EKD7_9BURK
enoyl-CoA hydratase
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
Displaying items 1-30 of 55 in total

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